Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0123
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 82 6e-16
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 2e-13
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 5e-13
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 65 7e-11
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 59 4e-09
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 57 1e-08
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 52 4e-07
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 50 2e-06
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 49 4e-06
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 38 0.012
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 36 0.028
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 34 0.15
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 32 0.46
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 29 3.3
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44) 28 7.5
SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 28 7.5
SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 28 10.0
SB_23937| Best HMM Match : PAN (HMM E-Value=0.12) 28 10.0
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 81.8 bits (193), Expect = 6e-16
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+ I+AFFGCCGA KEN CM+I F + LLI+ E+A + GY+ ++ + ++ +I
Sbjct: 417 ITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNI 476
Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
+YP KN + ID +Q D +CCG
Sbjct: 477 KEYP--KNNKAAIDAMQMDFECCG 498
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 73.7 bits (173), Expect = 2e-13
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+ +VAF GCCGA KEN CM+I F FLL++ + E+ G Y +E+ + +++ +I
Sbjct: 64 IALVAFLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKAI 123
Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
YP KN +K+I+ +QT +CCG
Sbjct: 124 ENYP-GKN-EKSINDMQTKFKCCG 145
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +2
Query: 65 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 244
MAL+G + VK L+ FN +F + GLI+ VGI A Y+ N Y P V+I
Sbjct: 1 MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVN-YATGPRVVIA 59
Query: 245 VGIM 256
VG +
Sbjct: 60 VGFI 63
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/84 (36%), Positives = 54/84 (64%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+FI+ F GC GA++EN C++ FSV L IIF +LA+G+ ++ +E ++ L ++
Sbjct: 57 MFILGFSGCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAV 116
Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
T+Y + ++Q ID +Q + +CCG
Sbjct: 117 TKYRDNADLQNLIDGVQQEFKCCG 140
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 68.1 bits (159), Expect = 8e-12
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 YVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 432
++ +V+FFGCCGA+KE+ C++ TF L II E+ GY+ +E+ + +++N +
Sbjct: 335 FIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDT 394
Query: 433 ITQY--PVDKNVQKTIDIIQTDLQCCG 507
I Y + + D IQ +CCG
Sbjct: 395 IVSYGEKGKEGITDAYDAIQKKEKCCG 421
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 64.9 bits (151), Expect = 7e-11
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
++++ FFGC GA+KEN + ++ +F+ + +A G+ +++ L D R L +
Sbjct: 83 LYLIVFFGCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVDPKAR-LEDGL 141
Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
Y D + Q+ ID IQT +CCG
Sbjct: 142 KSYQQDSSKQEFIDFIQTRFKCCG 165
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 60.5 bits (140), Expect = 2e-09
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+F++ FGC GA++EN C++ + II + G G+ LE V L +I
Sbjct: 114 LFVITIFGCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAI 173
Query: 436 TQY--PVDKNVQKTIDIIQTDLQCCG 507
Y P ++ ID +QT+LQCCG
Sbjct: 174 VLYRDPTKGDLHLIIDTVQTELQCCG 199
Score = 35.9 bits (79), Expect = 0.038
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 89 CVKYLMFCFNLLFAITGLIILIVGIRAEIN-SYPYMNFTDENFYKFAPIVLIIVGIMF 259
CVKY +F N++F + G +IL VGI I D NF A I L + G++F
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGIFIFIEMKEEITKLADLNFQP-AVIFLALGGLLF 115
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 441
IVAF CCGA+KE+ CM+ T+ + IF E+ + Y+ +E ++ ++ +++ +
Sbjct: 71 IVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNE 130
Query: 442 YPVDKN--VQKTIDIIQTDLQCCG 507
Y + + V + ID I D +CCG
Sbjct: 131 YHLSGHDAVTRAIDEIHRDFKCCG 154
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +2
Query: 65 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI-----RAEINSYPYMNFTDENFYKFAP 229
M+ + G C+K+++F FNLLF + G I +G+ + E+ + Y T YK AP
Sbjct: 1 MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGVWIISSKDEV-AGDYSRLTGTINYKTAP 59
Query: 230 IVLIIVGIM 256
I+ I++GI+
Sbjct: 60 ILCIVIGIV 68
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/84 (30%), Positives = 43/84 (51%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+F + FFGC GA++EN C + + + + + +A G Y + D ++ L +
Sbjct: 88 MFFIGFFGCVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQ-KDKVQALKERLKQDL 146
Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
+Y D Q ID +QT L+CCG
Sbjct: 147 KKYLDDPLNQDLIDFMQTLLKCCG 170
Score = 32.7 bits (71), Expect = 0.35
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 89 CVKYLMFCFNLLFAITGLIILIVGI 163
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+F++A GC GA++EN ++ + + + + ++ GIA YM +D V+ L +
Sbjct: 92 LFLIATVGCIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMH----QDKVVEKLKDDL 147
Query: 436 TQY--PVDKNVQKTIDIIQTDLQCCG 507
Y P +N Q ID +QT+L+CCG
Sbjct: 148 KHYRDPDKENFQFLIDRLQTNLKCCG 173
Score = 36.3 bits (80), Expect = 0.028
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +2
Query: 86 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
+C+KY++F N++F + G++IL++G N D Y+ +V++IVGI+
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYE-PSVVILIVGIL 91
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 52.4 bits (120), Expect = 4e-07
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM---KHTDLEDS--VMRN 420
+ IV+FFGC GA KEN CM+ TF V LLI+ E+A + Y K++ DS V
Sbjct: 66 IAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAYNYRGKNSLNSDSVKVKDE 125
Query: 421 LNASITQ-------YPVDKNVQKTIDIIQTDLQCCG 507
+ + +T+ V K D +Q +CCG
Sbjct: 126 IESDLTKALKGDYGSSGQDGVTKAFDALQEKQKCCG 161
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 77 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
G +K L+ FN+LF I G+ ++ VG AE+ ++ + Y ++I VG++
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEVQYGEFIEVSSVP-YATGSRLVIAVGVI 65
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/79 (25%), Positives = 42/79 (53%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
V IV GC +KEN +++++ + L++IF+ E+A G+ + +++ + + +
Sbjct: 70 VIIVCVVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGKM 129
Query: 436 TQYPVDKNVQKTIDIIQTD 492
+Y V K ID +Q +
Sbjct: 130 NRYGFTDAVTKAIDDLQKE 148
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
+F++A GC GA++EN ++ + + + + ++ G A Y+ D V+ L +
Sbjct: 92 LFLIATVGCIGALRENTILLAIYGGAVTLCLILLVSAGTAVYIH----RDKVVAKLKDDL 147
Query: 436 TQY--PVDKNVQKTIDIIQTDLQCCG 507
Y P +N Q ID +QT+L+CCG
Sbjct: 148 QHYRDPDKENFQFLIDRLQTNLKCCG 173
Score = 36.3 bits (80), Expect = 0.028
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +2
Query: 86 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
+C+KY++F N++F + G++IL++G N D Y+ +V++IVGI+
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYE-PSVVILIVGIL 91
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 313 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 492
I+ + V L ++F E+ G + + V + + Y D ++Q ID IQ++
Sbjct: 17 IVWYMVVLAVLFTLEIIAGFLSFFFVEETRSKVSSAIKLFVVHYQDDLDLQNAIDGIQSN 76
Query: 493 LQCCG 507
L+CCG
Sbjct: 77 LKCCG 81
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 253 YVFIVAFFGCCGAVKENHCMIIT 321
+V V FFGCCGAVKE+ CM+ T
Sbjct: 323 FVTFVGFFGCCGAVKESRCMLAT 345
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIIT-------------------------FSVFLLIIFVAEL 360
+ I+ F GCCGA+KE+ C++ T F V L ++F+ EL
Sbjct: 85 IAIIGFIGCCGALKEHTCLLKTVSIKSILYGYMYAKKISLTIRIYLQFGVILGLLFLVEL 144
Query: 361 AVGIAGYMKHTDLEDSVMRNLNASITQYP 447
I GY+ ++++ + L+ ++ YP
Sbjct: 145 GTAITGYIFRSEIKTGLSDGLDTALKDYP 173
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 116 NLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
+L+F + GL +L VGI A I YM + + Y A +LI +G +
Sbjct: 39 HLVFQLMGLSVLAVGIWARIQFSDYMKLSSHD-YATAAYILIGIGFL 84
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 36.3 bits (80), Expect = 0.028
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFS 327
V + F GCCGAVKEN C ++ S
Sbjct: 209 VMFIGFVGCCGAVKENKCFLLLVS 232
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 80 GMSCVKYLMFCFNLLFAITGLI 145
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 36.3 bits (80), Expect = 0.028
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMI 315
+ +++FFGCCGA+KE+ C++
Sbjct: 36 IALISFFGCCGAIKESRCLL 55
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFL 336
+ I+ F GCCGA+KE+ C++ T L
Sbjct: 227 IAIIGFIGCCGALKEHTCLLKTIKTGL 253
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 286 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKN 459
GA K+N+ ++ +V +IFV E+++G + + S + ++ Y
Sbjct: 82 GAFKQNNRVLTILAVLFFVIFVTEISLGANSLTLRNEGISKSSTSASGLQLLSIYGEHPG 141
Query: 460 VQKTIDIIQTDLQCCGKT 513
V + ID Q CCG T
Sbjct: 142 VTEMIDNTQMGSMCCGVT 159
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Frame = +1
Query: 238 HHCR----HYVFIVAFF---GC---CGAVKENHCMIITFSVFLLIIFVAELAVGI 372
H CR H+++ F GC C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 13 HGCRTARAHFIYASDLFASAGCLGVCALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 FIVAFFGCCG--AVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 432
FI+ GC ++K+ +F +F+ + + I TD + V N +
Sbjct: 111 FILCTLGCSRKPSIKQLRFYRSSFVIFITFEIIVMVFGIIQSSRVPTDTREIV--NWSVF 168
Query: 433 ITQYPVDKNVQKTIDIIQTDLQCCG 507
I Y D +++ +D IQ +L+CCG
Sbjct: 169 ILNYQ-DDSIRDDLDSIQKNLKCCG 192
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 127 CHYGIDHPDSWHQG*NKLVSLHELHR*ELLQVRSDRSHH 243
C+Y + PD+W + + SL R E++ R S+H
Sbjct: 120 CYYSLQPPDNWDKKKTSIQSLCSRERKEVITSRYQTSNH 158
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 177 FISALMPTIRMINPVMANRRLKQNMRYF 94
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)
Length = 241
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 582 DGVVAACTENSTNFHSKG-MSY*TGCSHEGHWVWCSPALESVI 707
DG + A FH +G M + +G ++EG WV P +E+V+
Sbjct: 119 DGTLYAGQWWGDEFHGEGSMVHCSGMAYEGLWVSGRPEMEAVV 161
>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 839
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 169 SPDANYQDDQSRNGKQKIEAKHEVLYTG---HSTFESHC 62
SP ++ RNG+ K+E+ YTG H+ +SHC
Sbjct: 22 SPLHAHKQSHCRNGEPKVESNKVQYYTGSPLHAHKQSHC 60
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +1
Query: 301 NHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDI 480
N ++ T V LI +A I + + S++ +L I +P + +D
Sbjct: 32 NRVLMFTGCVLALISLAGIVAAIINSKVFLIIINRSILADLKNRIKNFPGPGT--RVVDS 89
Query: 481 IQTDLQCCGKTVRP 522
IQ LQCCG P
Sbjct: 90 IQERLQCCGADSGP 103
>SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 190 VRIRVYFSPDANYQ---DDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKY 47
+ + +Y + ++ Y+ D+ R GK ++ +KH Y + + CY + Y
Sbjct: 56 LHLHLYDNRESEYRKRIDELEREGKWRLHSKHVTDYNKYIPARAKCYLLTY 106
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 22 SVVIQFGGNI*LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDHPD-SWHQG*NKLVSLHEL 198
+V + GN+ + + GSR W++ +PH L IDH D +W V+LH++
Sbjct: 127 AVALDMRGNVVVFHRGSRAWDLKFYMPHGLT--------IDHEDNTWITD----VALHQV 174
Query: 199 HR 204
H+
Sbjct: 175 HK 176
>SB_23937| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 270
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 391 TDLEDSVMRNLNASITQYPVDKNVQKTIDII--QTDLQCCG 507
T L S++R + YP+D KTID+ TDL CG
Sbjct: 211 TALMSSMVRVCFRTNKSYPMDMGASKTIDVYCQMTDLLNCG 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,819,244
Number of Sequences: 59808
Number of extensions: 551883
Number of successful extensions: 1541
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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