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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0123
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    59   3e-09
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    53   3e-07
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    51   8e-07
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    48   6e-06
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    48   6e-06
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    47   1e-05
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    44   9e-05
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    40   0.003
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    37   0.014
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    35   0.058
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      34   0.13 
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    32   0.54 
AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical ...    32   0.54 
Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U00052-11|AAK21425.2|  514|Caenorhabditis elegans Hypothetical p...    29   2.9  
AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70308-5|CAA94348.1|  207|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    29   5.0  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    29   5.0  
Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/84 (30%), Positives = 44/84 (52%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 441
           ++ F GCCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L   + +
Sbjct: 65  LLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVR 124

Query: 442 YPVDKNVQKTIDIIQTDLQCCGKT 513
           Y   + V+   D      +CCG T
Sbjct: 125 YHESRGVESAWDKTHQLFECCGVT 148



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +2

Query: 71  LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKFAPIVLIIV 247
           +EGG++ VKYL+F  NL+  + GL ++IVG   ++     ++   DE      PI+L+++
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59

Query: 248 G 250
           G
Sbjct: 60  G 60


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/83 (31%), Positives = 44/83 (53%)
 Frame = +1

Query: 259 FIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 438
           FI+ F GC G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  + 
Sbjct: 96  FIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVV 155

Query: 439 QYPVDKNVQKTIDIIQTDLQCCG 507
            Y  D ++Q  ID +Q    CCG
Sbjct: 156 GYRDDPDLQLLIDSMQETWMCCG 178



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 89  CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKFAPIVLIIVGIM 256
           CVKY +F FN++F + G  +L+ G+ A+I    ++N   +    Y      L+IVG +
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFL 94


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 27/88 (30%), Positives = 43/88 (48%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
           +F+V FFGCCGA  E+  ++  F   ++I+   EL   +       +   S+ + L  S 
Sbjct: 78  LFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSS 137

Query: 436 TQYPVDKNVQKTIDIIQTDLQCCGKTVR 519
             Y + KN++     IQ   QCCG T +
Sbjct: 138 ATYELRKNIKP----IQNVFQCCGATAQ 161


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
           + +V +FGC GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  +I
Sbjct: 67  IILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTI 126

Query: 436 -TQYPVDKNVQKTIDIIQTDLQCCG 507
             +Y  +   +   D +Q   +CCG
Sbjct: 127 RNRYSSETAFKDAFDTVQEKFECCG 151


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 435
           + +VA  GCCG    +   +I +S+ + ++ VA L+ GI    K   L+  +   LN  +
Sbjct: 124 MMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMV 183

Query: 436 TQYPVDKN-VQKTIDIIQTDLQCCG 507
             Y      VQ+++D +QT  +CCG
Sbjct: 184 QHYYQGPGVVQESLDHLQTAFRCCG 208


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/87 (25%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LN 426
           + +V+FFG  GA+++N  ++  F+  + + ++  +AV +  + + +TD  + +  N  L 
Sbjct: 83  ICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLL 142

Query: 427 ASITQYPVDKNVQKTIDIIQTDLQCCG 507
            ++  Y  ++N+ + +D +Q +L+CCG
Sbjct: 143 YAVKNYHTNRNLAEIMDALQENLECCG 169


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/87 (25%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LN 426
           + +V+FFG  GA+++N  ++  F+  + + ++  +AV +  + + +TD  + +  N  L 
Sbjct: 107 ICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLL 166

Query: 427 ASITQYPVDKNVQKTIDIIQTDLQCCG 507
            ++  Y  ++N+ + +D +Q +L+CCG
Sbjct: 167 YAVKNYHTNRNLAEIMDALQENLECCG 193


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
 Frame = +1

Query: 211 LLQVRSDRSHHCRHYVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKH 390
           LL+  +  S  C     +V F G CGAV  +  +++ F +FL+  F+A++A+G    + +
Sbjct: 22  LLKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFY 80

Query: 391 TDLEDSVMRNLNASI-------TQYPVDKNVQKTIDIIQTDLQCCGKTVRPTGPIT 537
            D   SV  N+   +       T  P +K V + ID +Q   +CCG ++ PT  I+
Sbjct: 81  KDKVYSVKENVREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCG-SLGPTDYIS 135


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY----MKHTDLEDSVMRNL 423
           V +VAF GCCGA KE   ++  +S  L++I   ++A  I  +    M   D  D +  +L
Sbjct: 93  VIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFLHSHMFENDFRDILHSSL 152

Query: 424 -------NASITQYPVDKNVQKTI-DIIQTDLQCCG 507
                  N  ++  P D  + KT  D I  +  CCG
Sbjct: 153 KMYNGTDNMKVSNNPQDGLLVKTAWDKIMIEKSCCG 188



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 62  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 196
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 441
           I+ F G  GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V   +  S   
Sbjct: 83  IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSF-- 140

Query: 442 YPVDKNVQKTIDIIQTDLQCCG 507
              + N Q  I        CCG
Sbjct: 141 ---NMNAQADISAFNFRYNCCG 159


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD----LEDSVMRNL 423
           +FI+   G  G    N  ++ ++  F++++ +      I G +   +    L  S++ N+
Sbjct: 59  IFIIVAVGYLGVSWSNKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNI 118

Query: 424 N--ASITQYPVDKNVQKTIDIIQTDLQCCG 507
           N  A +T+   +  +  T D +Q +LQCCG
Sbjct: 119 NTTAVVTKIGREIKLSLTWDHLQRELQCCG 148


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 543 PIPSTCCSAQEINDGVVAACTENSTNFHSK 632
           P+P+T CSA  I++  V +C   ST  H+K
Sbjct: 96  PLPATFCSAASIDNNAVKSCKNKSTTLHAK 125


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
           + +VA  GCCG    +   +I +S+ + ++ VA L+ GI
Sbjct: 235 MMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 313 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 492
           +IT+ V ++++   E+  G+A  ++   L D+    ++A  T      N    + IIQ  
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155

Query: 493 LQCCG 507
             CCG
Sbjct: 156 YNCCG 160


>AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical
           protein Y45F10B.1 protein.
          Length = 241

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASI 435
           ++ F GC      +   +    V + I+FV ++ V I  ++ + D    + V    +  +
Sbjct: 77  VLGFCGCFAVGFGSKTALSVHLVLVFIVFVVKI-VAIVMFLANNDHLRREFVGVYRDELV 135

Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
             Y  +   + T+D + T L+CCG
Sbjct: 136 ANYHNNSRTKNTLDWVHTSLKCCG 159


>Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical
           protein K01D12.6 protein.
          Length = 499

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +2

Query: 626 LEGDVLLNWLFT*RTLGMVLAGVGIG------NRFWGQLLGVKIPQ 745
           L G + +N + T RT+  V AG+GIG       R+W Q    K+PQ
Sbjct: 9   LPGGIKMNEIITKRTVLSVAAGIGIGIVFANFVRYWRQKREAKVPQ 54


>U00052-11|AAK21425.2|  514|Caenorhabditis elegans Hypothetical
           protein K02F3.1 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 516 DCFTAALQVCLYDINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSD 370
           D F  A +   + + ++L+   + + +   VQ+AH    Q+R LHV  D
Sbjct: 208 DSFIQAPEASSFALQTVLENWTFPLQNEQIVQLAHANTLQMRALHVKGD 256


>AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical
           protein Y51H1A.2 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 560 LLRPGDQ*RRRRGLHRELDQLPLEGDVLLNWLFT*RTLGMVLAGV 694
           LL  GDQ  R RGL + L  LP+      ++L T     ++LAG+
Sbjct: 162 LLSDGDQSERIRGLLKPLSSLPISAATNSSFLNTWTPTPLILAGL 206


>Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical
           protein F53B2.2 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASI 435
           ++   GC      +   +    V + ++FV ++ V I  ++ + D    + V    +  +
Sbjct: 66  VLGLCGCFAVCFGSKTALSVHLVLVFLVFVVKI-VAIVMFLANKDHLRREFVGVYRDELV 124

Query: 436 TQYPVDKNVQKTIDIIQTDLQCCG 507
             Y  +   + T+D + T L+CCG
Sbjct: 125 ANYHNNSRTKNTLDWVHTSLKCCG 148


>Z70308-5|CAA94348.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.9 protein.
          Length = 207

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 582 DGVVAACTENSTNFHSKGMSY*TGCSHEGHWVWCSPALESVIAFG 716
           D  VAA  +N  N    G S  TG     +W W S  + S+ ++G
Sbjct: 59  DSTVAASAQNYANTCPTGHSKGTGYGENLYWSWTSADVGSLDSYG 103


>Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.6 protein.
          Length = 207

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 582 DGVVAACTENSTNFHSKGMSY*TGCSHEGHWVWCSPALESVIAFGVSSS 728
           D  VA   +N  N    G S  +G     +W W S  + ++  FG ++S
Sbjct: 61  DATVATSAQNYANTCPTGHSQGSGYGENLYWYWTSGTIGNLDTFGPAAS 109


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 292 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 468
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 469 T 471
           +
Sbjct: 59  S 59


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 292 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 468
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 469 T 471
           +
Sbjct: 59  S 59


>Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.10 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 582 DGVVAACTENSTNFHSKGMSY*TGCSHEGHWVWCSPALESVIAFGVSSS 728
           D  VAA  +N  N    G S   G     +W W S +L  +  +G ++S
Sbjct: 61  DSAVAASAQNYANGCPTGHSGDAGLGENLYWYWTSGSLGDLNQYGSAAS 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,122
Number of Sequences: 27780
Number of extensions: 413080
Number of successful extensions: 1390
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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