Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0123
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    78   8e-17
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 78.2 bits (184), Expect = 8e-17
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNA 429
           +F+++FFGCCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++      
Sbjct: 62  IFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQE 121

Query: 430 SITQYPVDKNVQKTIDIIQTDLQCCG 507
               Y ++   +  ID IQ +LQCCG
Sbjct: 122 IFNGYFLNSESKDFIDFIQKNLQCCG 147



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +2

Query: 80  GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVG 250
           GM  +KYL+F FN +FA+ GL IL +G+   +     ++   E    F  I LI++G
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLG 59



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 510 NSPADWADHGLPIPSTCCSAQEIN 581
           +S +D+ D   PIP++CC++ E N
Sbjct: 149 HSLSDYNDK--PIPASCCNSPENN 170


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 85  VLCKVPHVLLQ 117
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,656
Number of Sequences: 438
Number of extensions: 5215
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)