Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0123
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pf...    30   1.5  
At1g32400.2 68414.m03998 senescence-associated family protein co...    29   2.7  
At1g32400.1 68414.m03997 senescence-associated family protein co...    29   2.7  
At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot...    29   3.5  
At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase...    29   3.5  
At1g63260.2 68414.m07151 senescence-associated family protein si...    28   8.2  
At1g63260.1 68414.m07152 senescence-associated family protein si...    28   8.2  

>At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 (cDNAs
           induced in meiotic prophase in lily microsporocytes)
           GI:431154 from [Lilium longiflorum]
          Length = 261

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHT 393
           VF+  FF  CG  ++ H ++I+  + + ++FVA LAV +   ++HT
Sbjct: 87  VFLTIFFVFCG--RQQHRLVISAVLTVQVVFVATLAV-LVLTLEHT 129


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 384
           +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 92  LFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 384
           +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 92  LFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
           similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
           precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
           (Proline carboxypeptidase) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 515

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 680 PYPMSFM*TTSLVRHPLRVEVGRVLGAGRDDAVIDLLGGAARARYGQT 537
           PYP  FM    L  HP+R    ++ GAG + +++D +       Y  T
Sbjct: 303 PYPADFM--MPLPGHPIREVCRKIDGAGSNASILDRIYAGISVYYNYT 348


>At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase PG1 GP|5669846,
           PG2 GI:5669848 from [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 632 GDVLLNWLFT*RTLGMVLAGVGI----GNRFWGQLLGVKIPQCWPRFVPFRRPN 781
           G  LL W+      G+ + G GI    G+ +W  ++G K+P+  P  + F   N
Sbjct: 127 GSGLLQWIEFKALQGITIKGKGIIDGRGSVWWNDMMGTKMPRTKPTALRFYGSN 180


>At1g63260.2 68414.m07151 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 258

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 253 YVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 384
           ++F+++  G  GA K +  ++  +   LLI+ +A L   +  ++
Sbjct: 52  FIFLISIIGFLGACKRSVALLWIYLAVLLIVLIAILVFTVLAFI 95


>At1g63260.1 68414.m07152 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 284

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 253 YVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 384
           ++F+++  G  GA K +  ++  +   LLI+ +A L   +  ++
Sbjct: 52  FIFLISIIGFLGACKRSVALLWIYLAVLLIVLIAILVFTVLAFI 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,158
Number of Sequences: 28952
Number of extensions: 382678
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)