Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0122
         (261 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.54 
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   0.72 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   3.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   5.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 0.54
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 240  WKSSWLDRTACPAPTSTPSVRRPAXT 163
            W ++   RT    PT+T +  RP  T
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTT 1077


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 0.72
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 240 WKSSWLDRTACPA 202
           W S WL+R A PA
Sbjct: 86  WVSFWLNRNATPA 98


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 219 RTACPAPTSTPSVRRP 172
           +  CP PT    V RP
Sbjct: 86  KNECPEPTCDEPVHRP 101


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 259 CSIEVDLEEFVARPDRVSGADINA 188
           C IEV ++          G+D NA
Sbjct: 292 CPIEVSIDNHTLSVISTDGSDFNA 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,179
Number of Sequences: 336
Number of extensions: 538
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4164927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)