Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0122
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 44 3e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 38 2e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 37 5e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 33 0.006
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 33 0.006
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 32 0.011
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 31 0.033
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.077
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 28 0.18
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 0.95
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 0.95
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 1.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 23 6.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 23 8.8
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 23 8.8
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 44.4 bits (100), Expect = 3e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 256 SIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENR 146
S EVDL+ F+ RPD SGA I AI Q+AG AVR++R
Sbjct: 325 SPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSR 361
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 38.3 bits (85), Expect = 2e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+V+LEE + D +SGA+I AI EAG A+RE R DF
Sbjct: 384 DVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDF 426
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 36.7 bits (81), Expect = 5e-04
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+DL+ + + SGA++ +C EAG A+RE R +DF
Sbjct: 339 IDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDF 380
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.006
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -3
Query: 256 SIEVDLE-EFVAR--PDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+I+ D+ E +AR P + +GA++ ++C EAG A+R R + KDF
Sbjct: 367 AIDKDIRWELIARLCPSQ-TGAELRSVCTEAGMFAIRARRRVATEKDF 413
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.1 bits (72), Expect = 0.006
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
+VDL+ + + SGA++ A+CQEAG A+ E+
Sbjct: 735 DVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHED 768
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.011
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENR 146
E+D E V D +GAD+ + EAG A++E+R
Sbjct: 324 EIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDR 358
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 30.7 bits (66), Expect = 0.033
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYM 140
+VDLE+ A G+D+ ++C EA +RE M
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDM 449
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 29.5 bits (63), Expect = 0.077
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 259 CSIEVDLEEFVARPDRVSGADINAICQEAGXHAVR 155
C E DLEE V + SG+DI A+ ++A +R
Sbjct: 574 CLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 0.18
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+++ EE D +GA + ++C EAG A+R+
Sbjct: 377 DINWEELARSTDEYNGAMLKSVCVEAGMIALRQ 409
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 205 GADINAICQEAGXHAVR 155
GAD+ A+C EA +AVR
Sbjct: 582 GADLKALCTEAALNAVR 598
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 0.95
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 144 YLFSLTACXPAS*QMALMSAPDTRSGRATNSSKSTS 251
Y + ++ P+S + S+P + S ++++SSKS+S
Sbjct: 145 YFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSS 180
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADIN 191
E+DLE F +P R GADI+
Sbjct: 120 EIDLESFDDKPWRKPGADIS 139
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 205 GADINAICQEAGXHAVR 155
GAD+ A+C EA ++++
Sbjct: 476 GADLRALCTEAALNSIK 492
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 244 DLEEFVARPDRVSGADINAICQEAGXHAVR 155
D+E V + SG+D+ A+ ++A +R
Sbjct: 659 DIEAIVKATEYYSGSDLTALAKDAAMGPLR 688
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHA 161
+VD+EE + SGA+I + + A A
Sbjct: 474 DVDMEELASLTKNFSGAEIAGLIKSASSFA 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,215
Number of Sequences: 5004
Number of extensions: 8308
Number of successful extensions: 35
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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