Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0122
(261 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 6e-04
SB_58910| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.048
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 31 0.15
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 29 0.59
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 0.79
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 28 1.4
SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8) 27 2.4
SB_3478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 26 4.2
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 26 4.2
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 26 4.2
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_33137| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -3
Query: 259 CSIEVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
C +DLE+ V R + SGA+I A+C+EA A++EN
Sbjct: 724 CEGSLDLEDLVERTEGYSGAEIAAVCREAALAALQEN 760
>SB_58910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 32.7 bits (71), Expect = 0.048
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 244 DLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
D E V D +GAD+ +C EAG A+R R +DF
Sbjct: 115 DYEAVVKLSDGFNGADLRNVCTEAGMFAIRGERDYVIEEDF 155
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 208 SGADINAICQEAGXHAVRENRYMXRPKDF 122
SGADI IC EA HA R N+ K+F
Sbjct: 333 SGADIANICNEAALHAARLNKKNVDTKNF 361
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 243 IWKSSWLDRTACPAP-TSTPSVRRPAXT 163
+WK W ACP P T+ VR PA T
Sbjct: 14 LWKHGWPSVLACPRPLTAVAQVRIPAQT 41
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 236 RVRGSTGPRVRRRHQRHLSGGRXARCQGKQIHGPS*RFRK 117
R RG GP+ R H G R +G + GP +FR+
Sbjct: 835 RFRGPEGPQFRGPDGPHFGGPDGPRFRGPEERGPGGQFRR 874
>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 224 STGPRVRRRHQRHLSGGRXARCQGK 150
ST P+ +RRH RH SG + + K
Sbjct: 566 STSPKAKRRHHRHSSGSHGSGSKHK 590
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDL+ SGAD+ ICQ A A+RE
Sbjct: 485 DVDLDYVAKVTHGFSGADLTEICQRACKLAIRE 517
>SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)
Length = 625
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 212 RVRRRHQRHLSGG 174
RVRRRH RH+ GG
Sbjct: 128 RVRRRHLRHIGGG 140
>SB_3478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADI 194
+V+LEEF+ D +SGADI
Sbjct: 33 DVNLEEFIMAKDDLSGADI 51
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PDSVXAGLLTDGVDVGAGHAVRSSHELFQIHFNR 256
PDS+ +L + + V A H V +HFNR
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNR 143
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PDSVXAGLLTDGVDVGAGHAVRSSHELFQIHFNR 256
PDS+ +L + + V A H V +HFNR
Sbjct: 344 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNR 377
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PDSVXAGLLTDGVDVGAGHAVRSSHELFQIHFNR 256
PDS+ +L + + V A H V +HFNR
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNR 143
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PDSVXAGLLTDGVDVGAGHAVRSSHELFQIHFNR 256
PDS+ +L + + V A H V +HFNR
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNR 143
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PDSVXAGLLTDGVDVGAGHAVRSSHELFQIHFNR 256
PDS+ +L + + V A H V +HFNR
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNR 143
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVR 155
+V+ +E D +GA + A+C EAG A+R
Sbjct: 285 DVNFDELSRCTDDFNGAMLKAVCVEAGMIALR 316
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 187 ICQEAGXHAVRENRYMXRPKDF 122
+C EAG +A+RE R +DF
Sbjct: 367 VCTEAGMYALRERRVHVTQEDF 388
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 256 SIEVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
S++VDL GAD+ ++CQ+A A++ +
Sbjct: 401 SVDVDLTHLAEITVGYVGADLASLCQQAAFAALKRS 436
>SB_33137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 146 SVFPDSVXAGLLTDGVDVGAGHAVRSSHELFQI 244
S PDS+ + + G DVG G +R+ EL +
Sbjct: 154 STLPDSMFKIIDSTGPDVGGGPVMRNGLELLAL 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,704,376
Number of Sequences: 59808
Number of extensions: 70657
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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