Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0122
         (261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.27 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.27 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.82 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.82 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   0.82 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   7.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   7.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   7.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.27
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 240 WKSSWLDRTACPAPTS 193
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.27
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 240 WKSSWLDRTACPAPTS 193
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 240 WKSSWLDRTACPA 202
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 240 WKSSWLDRTACPA 202
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 240 WKSSWLDRTACPA 202
           W S WL+R A PA
Sbjct: 178 WVSFWLNRNATPA 190


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 NL*DGPCICF 153
           N+ DG C+CF
Sbjct: 364 NVWDGVCMCF 373


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 NL*DGPCICF 153
           N+ DG C+CF
Sbjct: 333 NVWDGVCMCF 342


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 NL*DGPCICF 153
           N+ DG C+CF
Sbjct: 384 NVWDGVCMCF 393


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 NL*DGPCICF 153
           N+ DG C+CF
Sbjct: 333 NVWDGVCMCF 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,819
Number of Sequences: 438
Number of extensions: 602
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)