Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0122
(261 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 72 6e-14
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 48 6e-07
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 48 1e-06
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 39 5e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 39 5e-04
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 36 0.005
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 35 0.006
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 35 0.009
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 33 0.034
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.034
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 33 0.034
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.034
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 32 0.045
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 32 0.045
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 32 0.045
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 32 0.060
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 31 0.14
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 1.3
At4g21585.1 68417.m03124 bifunctional nuclease, putative similar... 27 1.7
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 2.3
At2g29525.2 68415.m03585 expressed protein 27 2.3
At2g29525.1 68415.m03586 expressed protein 27 2.3
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 27 2.3
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 27 2.3
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar... 26 3.0
At5g63350.1 68418.m07952 expressed protein 26 3.9
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 26 3.9
At3g62060.1 68416.m06973 pectinacetylesterase family protein sim... 25 5.2
At5g28482.1 68418.m03463 hypothetical protein similar to At2g066... 25 6.9
At2g46930.1 68415.m05862 pectinacetylesterase, putative similar ... 25 6.9
At2g12120.1 68415.m01304 hypothetical protein similar to At2g066... 25 6.9
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 25 6.9
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 25 6.9
At1g54770.1 68414.m06245 expressed protein 25 6.9
At5g30495.2 68418.m03660 expressed protein 25 9.1
At5g30495.1 68418.m03659 expressed protein 25 9.1
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 71.7 bits (168), Expect = 6e-14
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = -3
Query: 256 SIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
S EVDLE++V+RPD++S A+I AICQEAG HAVR+NRY+ PKDF
Sbjct: 345 SDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 389
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 48.4 bits (110), Expect = 6e-07
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -3
Query: 256 SIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
S +V+LEEFV D SGADI AIC EAG A+RE R DF
Sbjct: 378 SEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDF 422
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/43 (55%), Positives = 27/43 (62%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+V+LEEFV D SGADI AIC EAG A+RE R DF
Sbjct: 380 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDF 422
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+DL++ + + SGA++ A+C EAG A+RE R +DF
Sbjct: 355 IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+DL++ + + SGA++ A+C EAG A+RE R +DF
Sbjct: 355 IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 259 CSIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
C ++ E +GADI ++C EAG +A+R R KDF
Sbjct: 357 CERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 402
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 35.1 bits (77), Expect = 0.006
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
E+D E V + +GAD+ IC EAG A+R R +DF
Sbjct: 331 EIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
E+D E V + +GAD+ IC EAG A+R R +DF
Sbjct: 331 EIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
+VDL SGADI ICQ + +A+REN
Sbjct: 673 DVDLRALAKYTQGFSGADITEICQRSCKYAIREN 706
Score = 27.9 bits (59), Expect = 0.98
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDLE GAD+ A+C EA +RE
Sbjct: 397 DVDLERVSKDTHGYVGADLAALCTEAALQCIRE 429
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+V+ EE D +GA + A+C EAG A+R + +DF
Sbjct: 363 DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 405
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 32.7 bits (71), Expect = 0.034
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
+VDL + D +GA++ +C+E+G ++REN
Sbjct: 479 DVDLRKIAEETDLFTGAELEGLCRESGTVSLREN 512
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
+V+ EE D +GA + A+C EAG A+R + +DF
Sbjct: 362 DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
+VD+ SGADI ICQ A +A+REN
Sbjct: 672 DVDVTALAKYTQGFSGADITEICQRACKYAIREN 705
Score = 28.3 bits (60), Expect = 0.74
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDLE GAD+ A+C EA +RE
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIRE 428
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVREN 149
+VD+ SGADI ICQ A +A+REN
Sbjct: 673 DVDIGALAKYTQGFSGADITEICQRACKYAIREN 706
Score = 28.3 bits (60), Expect = 0.74
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDLE GAD+ A+C EA +RE
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIRE 428
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 259 CSIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKDF 122
C ++ E +GADI ++C EAG +A+ R KDF
Sbjct: 394 CERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDF 439
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 31.9 bits (69), Expect = 0.060
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3
Query: 259 CSIEVDLEEFVARPDRVSGADINAICQEAGXHAVRENRYM 140
CS ++ L+E + +GADI+ IC+EA A+ E+ M
Sbjct: 912 CSSDICLKELASITKGYTGADISLICREAAIAALEESLEM 951
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 244 DLEEFVARPDRVSGADINAICQEAGXHAVRE 152
D+++ V + SG+D+ A+C+EA +RE
Sbjct: 407 DIDKIVKETEGYSGSDLQALCEEAAMMPIRE 437
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDLE D SG+D+ +C A +RE
Sbjct: 1154 DVDLEAIANMTDGYSGSDLKNLCVTAAHFPIRE 1186
>At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to
bifunctional nuclease [Zinnia elegans]
gi|4099833|gb|AAD00694
Length = 299
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 243 IWKSSWLDRTACPAPTSTPSV 181
+W+S L++TACP P ++ S+
Sbjct: 222 LWESCQLNQTACPNPYASESI 242
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
++DLE + SGAD+ A+ +A AV E
Sbjct: 1033 DIDLEPIALMTEGFSGADLQALLSDAQLAAVHE 1065
>At2g29525.2 68415.m03585 expressed protein
Length = 251
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 185 DGVDVGAGHAVRSSHELFQIHFNRT 259
DGV G G + SSH +F + F RT
Sbjct: 167 DGVIYGCGDLIFSSHTIFTLVFVRT 191
>At2g29525.1 68415.m03586 expressed protein
Length = 289
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 185 DGVDVGAGHAVRSSHELFQIHFNRT 259
DGV G G + SSH +F + F RT
Sbjct: 167 DGVIYGCGDLIFSSHTIFTLVFVRT 191
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 238 EEFVARPDRVSGADINAICQEAGXHAVRE 152
EE A GAD+ A+C EA A RE
Sbjct: 580 EELAATCVGYCGADLKALCTEAAIRAFRE 608
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 250 EVDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+VDLE D SG+D+ +C A +RE
Sbjct: 1141 DVDLEAIANMTDGYSGSDLKNLCVTAAHLPIRE 1173
>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
bifunctional nuclease [Zinnia elegans]
gi|4099833|gb|AAD00694
Length = 294
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 240 WKSSWLDRTACPAPTSTPSV 181
W+S L++TACP P ++ S+
Sbjct: 218 WESCQLNQTACPNPYASESI 237
>At5g63350.1 68418.m07952 expressed protein
Length = 302
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 245 GFGRVRGSTGPRVRRRHQRHLSGGRXARCQGKQ 147
G + G +G R +R++Q+ SGG RC K+
Sbjct: 60 GSSDLSGKSG-RGKRKYQKDCSGGNSRRCNKKK 91
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRE 152
+D +E D SG+D+ C A VRE
Sbjct: 604 LDFQELAQMTDGYSGSDLKNFCTTAAYRPVRE 635
>At3g62060.1 68416.m06973 pectinacetylesterase family protein
similar to pectinacetylesterase precursor GI:1431629
from [Vigna radiata]; contains Pfam profile: PF03283
pectinacetylesterase
Length = 419
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 170 AGLLTDGVDVGAGHAVRS 223
AG+ D VDV GH++R+
Sbjct: 229 AGMFLDSVDVSGGHSLRN 246
>At5g28482.1 68418.m03463 hypothetical protein similar to At2g06630,
At2g12120, At1g45090, At2g05470
Length = 231
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 235 EFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKD 125
+ V RPD + GA+I ++C++ + V + + P++
Sbjct: 38 DVVYRPDVLKGANIFSMCEDPDDYQVDGSHHPSGPQE 74
>At2g46930.1 68415.m05862 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 416
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 170 AGLLTDGVDVGAGHAVR 220
AG+ D VDV GH++R
Sbjct: 227 AGMFMDAVDVSGGHSLR 243
>At2g12120.1 68415.m01304 hypothetical protein similar to At2g06630,
At1g45090, At2g05470, At5g28482
Length = 231
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 235 EFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKD 125
+ V RPD + GA+I ++C++ + V + + P++
Sbjct: 38 DVVYRPDVLKGANIFSMCEDPDDYQVDGSHHPSGPQE 74
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKD 125
+D +E + +G+D+ +C A VRE R KD
Sbjct: 712 LDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELIQQERIKD 752
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 247 VDLEEFVARPDRVSGADINAICQEAGXHAVRENRYMXRPKD 125
+D +E + +G+D+ +C A VRE R KD
Sbjct: 707 LDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELIQQERIKD 747
>At1g54770.1 68414.m06245 expressed protein
Length = 189
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 RLKWIWKSSWLDRTACPAPTSTPSVRRPAXTLSGKT 148
+LK S+W D PAPT TP ++R L +T
Sbjct: 62 QLKDTTGSNWFDM---PAPTMTPELKRDLQLLKLRT 94
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 234 SSWLDRTACPAPTSTPSVRRPAXTLSGKT 148
S+W D PAPT TP ++R L +T
Sbjct: 76 SNWFDM---PAPTMTPELKRDLQLLKLRT 101
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 234 SSWLDRTACPAPTSTPSVRRPAXTLSGKT 148
S+W D PAPT TP ++R L +T
Sbjct: 76 SNWFDM---PAPTMTPELKRDLQLLKLRT 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,961,201
Number of Sequences: 28952
Number of extensions: 49409
Number of successful extensions: 206
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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