Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0120
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.0  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.2  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   6.9  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   6.9  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 476  LIAFGCVRVVENDINAGQFPLXNWS 550
            L+ FGC+R+ EN+     F + NW+
Sbjct: 1642 LLPFGCIRLSENNEVRKAFSVSNWA 1666


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 292  AAWVQRMALSCSRFTETLPVYLC*AWQYSALSKRNSINVTTEGISRYF 149
            A+W +R   SCS+   TLP   C  ++Y    K+++++    G  R F
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVEC-FFKY----KKDALHTLLPGFMRCF 2133


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 78  HAQQKLSL*TELKVRSLHCSGSTLS 4
           H QQ+ S    L VR L C  STLS
Sbjct: 159 HTQQRYSTLKRLMVRCLSCEYSTLS 183


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 278 ADGALLLSLHGNTSCLFVLSLAVLRAVQAELHQCHHRRDLQI 153
           +DG  L  LHG+TS  FV SL  +   Q  +  C   R ++I
Sbjct: 203 SDGEFLYELHGHTS--FVYSLTYIHNQQL-IASCGEDRTIRI 241


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 286 WVQRMALSCSRFTETLP 236
           W+ RMAL C  F+  LP
Sbjct: 523 WIARMALLCKYFSNELP 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,312
Number of Sequences: 5004
Number of extensions: 47689
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)