Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0120
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570...    29   3.1  
09_06_0280 + 22010270-22011407,22011890-22013097                       29   4.1  
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    29   4.1  
06_01_0866 + 6582131-6583294                                           28   7.1  
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883...    28   7.1  
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    28   7.1  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    28   7.1  

>04_03_0925 -
           20856628-20856690,20856786-20856845,20856924-20857001,
           20857127-20857192,20857542-20858675,20858991-20860283
          Length = 897

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 294 RQHGSSGWRSPALASRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 145
           ++ GS+   +PA A+RK         G  PR P GT +    +  P T+A
Sbjct: 76  KESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARNIPATTA 125


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 183 MEFRLDSAEYCQAQHK*TGSVSVKREQESAIRWTHAAGSG 302
           +E  L+S      Q +   SVS K+ +E  + W+HA   G
Sbjct: 719 VEMTLESIRSSSLQQEVLHSVSTKKSKELHVSWSHAISEG 758


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 262 RRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 357
           RR PS+ P  P AA +    R  PHT  S +T
Sbjct: 58  RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89


>06_01_0866 + 6582131-6583294
          Length = 387

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 330 NSARGASSHRRYRQHGSSG 274
           N A+G+S HR+++ HG  G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372


>02_05_0415 +
           28787353-28787496,28787658-28788204,28788297-28788392,
           28788532-28788645,28788929-28789962,28790053-28790124
          Length = 668

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 253 SESRRAPSAGPMLPVAAVTRRT--SRTVPHTYPSSVTLNSEPR 375
           S SRRA +    +P  A TRRT  +R V    P+  TL    R
Sbjct: 133 STSRRARATPAPIPTPATTRRTAAARKVEEAAPTPATLRRSQR 175


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -3

Query: 339 GMWNSARGASSHRRYRQHGSSGWRSPALASRKHFLFICVEPGSTPRCPSGTPSMSPQKG 163
           GMW+  R  + +   +    +GWR   LA+ KHF+  C +  S  +  SG  S+S + G
Sbjct: 275 GMWD--RTLTVNGFSKAFAMTGWRLGYLAAPKHFVAACGKIQS--QFTSGASSISQKAG 329


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 480 SLSDAFEWLKTTSMRGSSHXIIGAPF 557
           S SD  EW+  +S RG+SH    +P+
Sbjct: 440 SFSDDSEWIMISSSRGTSHFFAISPY 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,493
Number of Sequences: 37544
Number of extensions: 329761
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)