Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0120
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   4.2  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      27   9.7  

>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 534 GNCPALMSFSTTRTHPKAIKQKFRMWKQIKLNH-----SET*ALXKLQQLNC 394
           G+ P  M   T +T PK + Q FR +KQ++  H      E  AL K   L+C
Sbjct: 38  GSLPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKKEQEEELKALAKKFSLSC 89


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -3

Query: 327  SARGASSHRRYRQHGSSGWRSPALASRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTS 148
            S R +   R  R+  S   R P  A R+H+  + +   S+P  P+ +   SP++ SPD+S
Sbjct: 1121 SPRESLQQRTPRRSHSEVSRLPVKADRQHYSSLDL---SSPETPTSSDFPSPRRESPDSS 1177

Query: 147  AR 142
             R
Sbjct: 1178 RR 1179


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 268 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 354
           AP+  P  P AA      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 292  PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 405
            PVAA+  +T+++VPHT  +  T    P  C  Q T  L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062


>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 531  NCPALMSFSTTRTHPKAIKQKFRMWKQIKLN 439
            N P +    T R    A+K+K R WKQI  N
Sbjct: 1279 NVPEINKGETNRGQNGAVKRKKRAWKQILRN 1309


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 330 NSARGASSHRRYRQHGSSGWRSPALASRKHFLFI-CVEPGSTPRCPSGTPSMSPQKGSPD 154
           +SAR A++  R    GS+  RS   ASR   + I  V  G      +G P +S +  +  
Sbjct: 670 DSARKAAAGGRTADQGSTACRSGDSASRSRTMQISAVIHGVNRHLDTGAPPISARPCTAM 729

Query: 153 TSARQNKV 130
           ++ +Q+K+
Sbjct: 730 STTQQSKI 737


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,851,984
Number of Sequences: 59808
Number of extensions: 375797
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)