Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0120
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -3

Query: 321 RGASSHRRYRQHGSSGWRSP-----ALASRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 157
           RG ++  R ++  ++GWRSP      +AS       C  PG  P  PSG P    + G P
Sbjct: 104 RGYNTGYRSQKKKNNGWRSPPRSGIVVASEGGTCMGCCNPG--PPGPSGHPGKPGRPGRP 161


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 222 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKV 130
           E GS+P+  + T    P+K S D +A +N+V
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,070
Number of Sequences: 27780
Number of extensions: 284219
Number of successful extensions: 851
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)