Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0118
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FL45 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_A0M410 Cluster: Sodium:alanine symporter family protein...    33   9.7  

>UniRef50_A2FL45 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 3445

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 49   NNINYVQDERKSNFTRFFFLPDKN*VDM 132
            +N  Y+ D+++  F RFFF  DKN +D+
Sbjct: 1208 SNATYLLDQQRQKFPRFFFCTDKNVIDI 1235


>UniRef50_A0M410 Cluster: Sodium:alanine symporter family protein;
           n=7; Bacteria|Rep: Sodium:alanine symporter family
           protein - Gramella forsetii (strain KT0803)
          Length = 702

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 347 YGPDMR-LKGLSSILSCLFLLVSQAFLFKGWKAVQYNRVYR*VGASVPIKQEVG 189
           YG + R +KGL   L+ LF ++     F G   +Q N+ ++ V   +PI Q  G
Sbjct: 375 YGLEKRNMKGLGKFLAGLFAVLGVGASFGGGNMIQSNQAFKIVSEQIPILQGHG 428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,705,378
Number of Sequences: 1657284
Number of extensions: 14365028
Number of successful extensions: 24333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24324
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)