Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0118
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   7.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 344 GPDMR--LKGLSSILSCLFLLVSQAFLFKGWKAV 249
           GPD    L  ++ IL  L  +    FLF+ W+++
Sbjct: 279 GPDRIDILSQINGILGSLVAITGGCFLFRAWESI 312


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 96  SCKITFSLILYIINIISK 43
           SCK TFSL+ Y  ++ +K
Sbjct: 106 SCKETFSLLYYEFDVATK 123


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 740 PHLVHGDPGPSQRGY 696
           PH +  D GP  RG+
Sbjct: 269 PHFIKDDYGPESRGF 283


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 613 MYLMWPLYMGYKYEYMGSRIKK 678
           +YL W L  G +   +G R+K+
Sbjct: 258 VYLRWNLTSGERVGLVGGRVKE 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,591
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)