Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0117
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.71 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.71 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.71 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.71 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 800 GWSFPNNPPPWLHSSHNPFINH 735
           G+ + N   P LHS H P I+H
Sbjct: 78  GYGYGNYYHPQLHSHHGPPIHH 99


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 800 GWSFPNNPPPWLHSSHNPFINH 735
           G+ + N   P LHS H P I+H
Sbjct: 78  GYGYGNYYHPQLHSHHGPPIHH 99


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 800 GWSFPNNPPPWLHSSHNPFINH 735
           G+ + N   P LHS H P I+H
Sbjct: 78  GYGYGNYYHPQLHSHHGPPIHH 99


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 800 GWSFPNNPPPWLHSSHNPFINH 735
           G+ + N   P LHS H P I+H
Sbjct: 78  GYGYGNYYHPQLHSHHGPPIHH 99


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 536 SCTENIYKKCCGIQQSGPHQKRR 604
           S  +N  +K CG+ +  PH  R+
Sbjct: 219 SLYQNATRKVCGVWKRIPHDYRK 241


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 773 PWLHSSHNPFINHGW 729
           P +H+S NPF+  G+
Sbjct: 244 PSIHNSINPFLGQGF 258


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 787 QITHHHGFIPPTTHSLTMDGFCESP 713
           Q+ HHH  +PP  HS+      E P
Sbjct: 48  QMWHHHSHMPP--HSVFAANNAEFP 70


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 787 QITHHHGFIPPTTHSLTMDGFCESP 713
           Q+ HHH  +PP  HS+      E P
Sbjct: 48  QMWHHHSHMPP--HSVFAANNAEFP 70


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 329 EHTNVLPHRRRCQPKRGRSGI 267
           E      H+RR +PKR R  I
Sbjct: 316 ERPRATDHQRRNEPKRPRPNI 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,791
Number of Sequences: 336
Number of extensions: 4581
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)