Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0117
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   4.1  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   5.5  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.6  

>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 633 GDLPLSWKHSLLF*CGPLCWMPQ 565
           G+LPLS+   L   CGP+C   Q
Sbjct: 200 GELPLSYPTLLAVLCGPICLAKQ 222


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 305 RRRCQPKRGRSGIREGQGLMQPLPGLVQGINSITNSQTIT-AVTWHSS 165
           +RR  P++    I EG  + +PLPG       + +  T+T   TWH +
Sbjct: 353 KRRVYPEQITINIGEGVPVPEPLPG--HQWAEVKHDNTVTWLATWHEN 398


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 788 PNNPPPWLHSSHNPFINHGW 729
           P +  PW    H+PF  +GW
Sbjct: 403 PCHTTPWQSHIHSPFAENGW 422


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 227 PNLEVVASNLALHEYLISLSSADTDACGAK 316
           PN + + +  A+ +YL+SL   D    G K
Sbjct: 258 PNKQTILTKNAIQDYLVSLKITDIRMLGGK 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,496
Number of Sequences: 5004
Number of extensions: 71080
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)