Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0117
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     29   5.2  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical
           protein F49C5.10 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 483 GSSYGXKNRSSSACTFAGLAQKTYIRNVAASSKVGRI 593
           G++Y  +NR  +AC   G+ QKT   +++A ++ G +
Sbjct: 54  GTNYKCRNRDCTACNIDGIIQKTDDGDMSAITQYGMV 90


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 535 VLHRKHI*EMLRHPAKWAASKKERVLPTEGE 627
           VL+++ + + ++HP+ +A SK    +PTEGE
Sbjct: 265 VLNKQQLLKTVKHPSIYAMSKMWISIPTEGE 295


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 535 VLHRKHI*EMLRHPAKWAASKKERVLPTEGE 627
           VL+++ + + ++HP+ +A SK    +PTEGE
Sbjct: 265 VLNKQQLLKTVKHPSIYAMSKMWISIPTEGE 295


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 260 GQGLMQPLPGLVQGINSITNSQ 195
           G G M  LPGL+  I S+ NSQ
Sbjct: 224 GMGEMVELPGLIDAIRSVINSQ 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,823
Number of Sequences: 27780
Number of extensions: 406099
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)