Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0117
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 563 CCGIQQSGPHQKRRECFQLRGRSPSSVF 646
           CCG   S   + RR  +    R P S+F
Sbjct: 366 CCGKWSSQKSEPRRSIYSSLLRYPRSIF 393


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +2

Query: 518 CLHICWSCTENIYKK----C--CGIQQSGPHQKRRECFQL 619
           C  +C  C E  Y      C  CG     PH+ +R C+QL
Sbjct: 466 CCWVCDQCEEYEYVHDEYTCMDCG-PGKWPHEDKRGCYQL 504


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +2

Query: 518 CLHICWSCTENIYK----KC--CGIQQSGPHQKRRECFQL 619
           C  +C  C E  Y      C  CG     PH+ +R C+QL
Sbjct: 556 CCWVCDQCEEYEYVYDEYTCMDCG-PGKWPHEDKRGCYQL 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,257
Number of Sequences: 438
Number of extensions: 5052
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)