Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0116
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    94   2e-20
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   3.6  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   3.6  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.3  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
 Frame = +2

Query: 17  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXASERRPHS---SRCVGHHEXTGDARR 187
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA    E        S      E  G   +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 188 SGENFTSSGTCWDLSSIIRL*PEDMKRQKYEMISXVXCNLYPFVQTVSKPDVTVADAVEN 367
           +       G    L+  I    +D+  Q  E I  V CNLYPF +T++KP+VT+ +AVE 
Sbjct: 63  TLHPAVHGGI---LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEE 119

Query: 368 IDIGGVTLLRA 400
           IDIGGVTLLRA
Sbjct: 120 IDIGGVTLLRA 130



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +3

Query: 114 RXLRNAGLTVQDVSDITRXPEMLGGRVKTLHPAVHAGILARLSDSDQK 257
           + +R +G+ V DVS IT  PE+LGGRVKTLHPAVH GILAR   SD+K
Sbjct: 35  KMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEK 82



 Score = 31.9 bits (69), Expect = 0.073
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 403 AKNHDRVTVVCDPADYDAVVKXIKENKHHQTTXGT 507
           AKNH RVT++ DPADY         +K  Q    T
Sbjct: 132 AKNHARVTILSDPADYATFTDKFLSDKLTQDDRNT 166


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 387 VTPPMSMFSTASATVTS-GLDTVWTNGYRLXXT 292
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 482 NIIRRLXAQAEISPEGVSLILSDYDLRHIRTTFRKQ 589
           N+ ++       SP+G+SL L  YD   +  TF K+
Sbjct: 319 NVFQKSIGDVCWSPDGLSLFLCSYDGNVLVCTFEKE 354


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 134 PHSSRCVGHHEXTGDARRSGENFTSSGTCWD 226
           PHS    GH + T  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -1

Query: 212 RWM*SFHPTSEHLRXSRDVRHILNCEAGVPKRPWRY 105
           +W+  FH ++  LR   +  ++   + G   RPW +
Sbjct: 578 QWVWGFHASNFFLRDETNETNVFFIDCGGSHRPWAF 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,232
Number of Sequences: 5004
Number of extensions: 35016
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)