Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0116
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 55 4e-08
08_01_0621 - 5426210-5427787 32 0.40
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 31 0.70
03_01_0112 + 902459-902770,903275-903280 30 1.2
10_08_0415 - 17761594-17762382 29 2.1
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 2.8
09_04_0652 - 19227686-19227926,19229368-19232294 29 3.7
06_01_0845 - 6430419-6431195 29 3.7
11_06_0257 + 21746643-21748091 28 6.5
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 27 8.6
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 8.6
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 27 8.6
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = +3
Query: 120 LRNAGLTVQDVSDITRXPEMLGGRVKTLHPAVHAGILAR 236
L AG+ V V IT PEML GRVKTLHP+VH GILAR
Sbjct: 82 LEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGILAR 120
Score = 52.4 bits (120), Expect = 3e-07
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Frame = +2
Query: 2 AXXKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXASERRPHSSRC--VGHHEXTG 175
A K AL+S+SDKT L L L G +I++GGTA+ + ++ + +
Sbjct: 43 AGVKQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEML 102
Query: 176 DAR-RSGENFTSSGTCWDLSSIIRL*PEDMKRQKYEMISXVXCNLYPFVQTVSKPDVTVA 352
D R ++ G L + + V NLYPF V+ ++
Sbjct: 103 DGRVKTLHPSVHGGILARRDQEHHL--KALNEHGIGTFDVVVVNLYPFYNKVTSGVISFE 160
Query: 353 DAVENIDIGGVTLLRA 400
D +ENIDIGG T++RA
Sbjct: 161 DGIENIDIGGPTMIRA 176
>08_01_0621 - 5426210-5427787
Length = 525
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 459 YSIVVGRVTDDGDPVVVLGCARRRVTPP 376
YS+ GR+ DDGD + + C RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 200 SFHPTSEHLRXSR-DVRHILNCEAGVPKRPWRYRHWQST 87
S HP S H S+ D I +C A V WR RH +T
Sbjct: 791 SHHPFSAHAHYSQPDFPTIASCRAAVASSKWRRRHPSTT 829
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 188 TSEHLRXSRDVRHILNCEAGVPKRPWRYR 102
T+ LR RD RH+ CE+GVPK R++
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPKEEARFK 85
>10_08_0415 - 17761594-17762382
Length = 262
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 32 SDKTGLLSLAKSLSECGLQLIASGGTATXASERRPHSSRCVGHHEXTGDARRSGENFTSS 211
S K L+ K L G + S G R +S C G + + GE + +
Sbjct: 95 SGKPRWLAATKGLDHNGGVGVFSLGAWRYKGVARQSASMCCGQLDHSSGMHDDGEVWLRA 154
Query: 212 GTCWDLSSIIR 244
G C D++ I+R
Sbjct: 155 GPCSDIAGIVR 165
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 43 GSTLVSKEPVGMWPAVDCQWRYR----HGRFGTPASQFKMCR 156
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCP-PYRVSADASRFGDRASASRMAR 169
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +2
Query: 62 KSLSECGLQLIASGGTATXASERRPHSSRCVGHHEXTGDARRSGENFTSSGTCW 223
++++E LI + SE+ P S C + ++G + GTCW
Sbjct: 427 QTVAEGNNSLIPGSESGQVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>06_01_0845 - 6430419-6431195
Length = 258
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +2
Query: 44 GLLSLAKSLSECGLQLIASGGTATXASERRPHSSRCVGHHEXTGDARRSGENFTSSGTCW 223
GL +L + ASG AT + P + C G E GD R E G CW
Sbjct: 15 GLQTLIAPDAAAAASRSASGYVATRTLKASPRAVGCPGGGE--GDGEREEEEEGEEGGCW 72
>11_06_0257 + 21746643-21748091
Length = 482
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 179 HLRXSRDVRHILNCEAGVPKRPWRYRHWQST 87
HL ++ R+++N +G WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 41 TGLLSLAKSLSECGLQLIASGGTATXASERRPHSSRCVGHHEXTGDAR 184
T L A + S C + + TA S RR H VG GD +
Sbjct: 147 TSTLQTASATSPCSGRTTGAAATAVPFSRRRRHGGGGVGRGPADGDGQ 194
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 125 PKRPWRYRHWQSTAGHIPTGS 63
P PW++ HWQ+ G + + S
Sbjct: 22 PVHPWQWHHWQNLLGLLSSSS 42
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 164 RDVRHILNCEAGVPKRPWRYRHWQSTAGHIPTGSLLTRVDPS 39
RD RH+ E+GV K RY+ H TGS L V PS
Sbjct: 63 RDGRHLAYAESGVRKEDARYK---VVFSHGFTGSRLDSVRPS 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,874
Number of Sequences: 37544
Number of extensions: 262171
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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