Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0116
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      68   7e-12
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                29   2.2  
SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       29   3.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 60/132 (45%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
 Frame = +2

Query: 14  LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATX---ASERRPHSSRCVGHHEXTGDAR 184
           LALLSVS+K GL+  AK L + G +L+ASGGTA     A       S   G  E  G   
Sbjct: 35  LALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGGRV 94

Query: 185 RSGENFTSSGTCWDLSSIIRL*PEDMKRQKYEMISXVXCNLYPFVQTVSKPDVTVADAVE 364
           ++       G    L+ +      DM +Q +E I  V CNLYPFV TV+K  V V++AVE
Sbjct: 95  KTLHPAVHGGI---LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVE 151

Query: 365 NIDIGGVTLLRA 400
            IDIGGVTLLRA
Sbjct: 152 QIDIGGVTLLRA 163



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +3

Query: 120 LRNAGLTVQDVSDITRXPEMLGGRVKTLHPAVHAGILARLSDSDQ 254
           +RNAG+ V+DVS+IT  PEMLGGRVKTLHPAVH GILAR+S+ D+
Sbjct: 70  IRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDK 114



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 26/59 (44%), Positives = 34/59 (57%)
 Frame = +1

Query: 403 AKNHDRVTVVCDPADYDAVVKXIKENKHHQTTXGTSRD*P*RRFTHTFGL*PSPYSDYF 579
           AKNH+RVTVVCDP DY+ V+  + EN+   T   T +    + F+HT        SDYF
Sbjct: 165 AKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASY-DMAISDYF 222


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 32/48 (66%), Positives = 37/48 (77%)
 Frame = +2

Query: 257 DMKRQKYEMISXVXCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 400
           DM +Q +E I  V CNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 13  DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 403 AKNHDRVTVVCDPADYD 453
           AKNH+RVTVVCDP DY+
Sbjct: 62  AKNHERVTVVCDPEDYN 78


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 415  DRVTVVCDPADYDAVVKXIKE-NKHHQ 492
            D +   CDPA+ +A++  I+E N+HHQ
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQ 1473


>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 105 VPPRXLRNAGLTVQDVSDITRXPEMLGGRVKT----LHPAVHAGILARLSDSDQ 254
           +PPR    A  TV D S     P+  GG+V +    L P V  G++   S S Q
Sbjct: 166 LPPRSSNEANETVIDTSLTDSPPDAEGGKVTSNEDELVPTVSQGVVEATSPSQQ 219


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 320  QTVSKPDVTVADAVENIDIGGVTLLRAQPRTTTGSPSSVTRPTT 451
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,972
Number of Sequences: 59808
Number of extensions: 300921
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)