Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0116
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    87   7e-18
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 57/132 (43%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
 Frame = +2

Query: 14  LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXASERR--PHSSRCVGHH-EXTGDAR 184
           LA++SVSDKTGL+ LA  L   GL LIASGGTA    ++    H    V    E  G   
Sbjct: 7   LAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEMLGGRV 66

Query: 185 RSGENFTSSGTCWDLSSIIRL*PEDMKRQKYEMISXVXCNLYPFVQTVSKPDVTVADAVE 364
           ++       G    L+       +D+++     +S V CNLYPF +TV   D +V +AVE
Sbjct: 67  KTLHPAVHGGI---LARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVE 123

Query: 365 NIDIGGVTLLRA 400
           NIDIGGVTLLRA
Sbjct: 124 NIDIGGVTLLRA 135



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 31/48 (64%), Positives = 41/48 (85%)
 Frame = +3

Query: 114 RXLRNAGLTVQDVSDITRXPEMLGGRVKTLHPAVHAGILARLSDSDQK 257
           + +R+ G+ V DV+D+T+ PEMLGGRVKTLHPAVH GILAR ++SD+K
Sbjct: 40  KAIRDQGIDVHDVADVTKFPEMLGGRVKTLHPAVHGGILARDTESDRK 87



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +1

Query: 403 AKNHDRVTVVCDPADYDAVVKXIK 474
           AKNH+RV+V+CDPADYD ++  +K
Sbjct: 137 AKNHERVSVICDPADYDHIISELK 160


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 286 YHLVLLTFHVFWSESDNRAKIPA 218
           YHL+L T    W+E D++ K+ A
Sbjct: 518 YHLILATTEATWAEIDDKKKVNA 540


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 286 YHLVLLTFHVFWSESDNRAKIPA 218
           YHL+L T    W+E D++ K+ A
Sbjct: 518 YHLILATTEATWAEIDDKKKVNA 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,551
Number of Sequences: 27780
Number of extensions: 207140
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)