Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0116
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    56   2e-08
At1g64410.1 68414.m07301 hypothetical protein                          28   4.1  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   4.1  
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   5.4  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +3

Query: 120 LRNAGLTVQDVSDITRXPEMLGGRVKTLHPAVHAGILAR 236
           L NAG++V  V  +T  PEML GRVKTLHP +H GILAR
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILAR 146



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
 Frame = +2

Query: 11  KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXASERRPHSSRC--VGHHEXTGDAR 184
           K AL+S+SDK  L SL   L E G  ++++GGTA+         ++   + H     D R
Sbjct: 72  KQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEMLDGR 131

Query: 185 RSGENFTSSGTCWDLSSIIRL*PEDMKRQKYEMISXVXCNLYPFVQTVSKPD-VTVADAV 361
               +    G       +     E +          V  NLYPF + V+ P  ++  D +
Sbjct: 132 VKTLHPNIHGGILARRDVEHH-MEALNEHGIGTFDVVVVNLYPFYEKVTAPGGISFEDGI 190

Query: 362 ENIDIGGVTLLRA 400
           ENIDIGG  ++RA
Sbjct: 191 ENIDIGGPAMIRA 203



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 403 AKNHDRVTVVCDPADYDAVVKXIKENKHHQ 492
           AKNH  V +V D  DY AV++ +K  +  Q
Sbjct: 205 AKNHKDVLIVVDSGDYQAVLEYLKGGQSDQ 234


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 406 KNHDRVTVVCDPADYDAVVKXIKENKHH 489
           K HDRVTV  +P D D   K   E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 406 KNHDRVTVVCDPADYDAVVKXIKENKHH 489
           K HDRVTV  +P D D   K   E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 13  TSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQF 144
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,139
Number of Sequences: 28952
Number of extensions: 193365
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)