Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0115
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   3.9  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   6.8  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   6.8  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   9.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.0  

>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 436 LLHKYPKNGMADILSSVQKKLCFIVS-LITF 347
           + H+YP    ++IL SV   + +IVS L+T+
Sbjct: 252 IFHEYPPKPWSEILPSVDTSIQYIVSHLVTY 282


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 288 LSLTNKFIKSHPI*LVQLDKKVINETIKHNFFCTLDKISAIPFLGYLCN 434
           LS+ +  +  H +   QLD KV ++   +NFF        IPF+    N
Sbjct: 301 LSIDDSKVPVHVLPFEQLDSKVEDQNRVNNFFHYSTPKDPIPFVKLFVN 349


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 182 ESEQNVFESGYLQFLMRFSSKPC 114
           E EQN   +GY Q+L+ F    C
Sbjct: 222 EKEQNDDPAGYSQYLLEFKKSKC 244


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 86  LVNVLASEPTQRTTK-AKIINFCISIVSF 3
           L N L++   +  TK AK++NFCI I  F
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLF 91


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 221  AFFKNLKTKISQFESEQNVF-ESGYLQF 141
            AFF  +  KI  F+ E N F E G L F
Sbjct: 976  AFFTRIPLKIKDFKKEINAFNEKGSLDF 1003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,743
Number of Sequences: 5004
Number of extensions: 64811
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)