Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0115
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62340.1 68418.m07825 invertase/pectin methylesterase inhibit...    31   0.85 
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   4.5  
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea...    29   4.5  
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote...    29   4.5  
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea...    28   6.0  
At2g42180.1 68415.m05220 expressed protein                             28   6.0  

>At5g62340.1 68418.m07825 invertase/pectin methylesterase inhibitor
           family protein similar to SP|Q42534 Pectinesterase 2
           precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2)
           {Arabidopsis thaliana}; contains Pfam profile PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 97  VHELRKHGFEENLMRNCK*PDSNTFCSDSNCDIFVLRFLKKA*NIFQCIFLMKNFE 264
           +  LRK  F+  ++++C  P ++TF +D  C +  L+ +    +   C+F +KN E
Sbjct: 90  ISHLRKSQFQ--ILQDCA-PSTDTFSTDCECSVQALQEVVNCNSWTDCLFHVKNAE 142


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 250 LKKYIGICFMPSLKTSKQKYHSSNLNKTYLNLVTYSSS 137
           LKK +G C  P L T    Y   + +  +    TYSSS
Sbjct: 532 LKKSLGSCVSPLLPTKNFTYTKRSYSNVFAKSSTYSSS 569


>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P35579 myosin heavy chain,
           nonmuscle type A (Cellular myosin heavy chain, type A,
           Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
          Length = 629

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 212 KNLKTKISQFESEQNVFESGYLQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKI 33
           +NLK +I Q E E+N  +    Q  M+    P  L    R H     + E    + K K+
Sbjct: 9   ENLKARIKQLEHERNELQKDIEQLCMQ-QGGPSILGVAARMHFQRTASLEQEIESLKLKL 67


>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
           protein-related contains 6 WD-40 repeats (PF00400) (2
           weak); related to KIAA1988 protein (GI:18916910) [Homo
           sapiens]
          Length = 810

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 232 ICFMPSLKTSKQKYHSSNLNKTYLNLVTYSSS*DFLRSHVSS 107
           IC  P  +   Q  H++  N+T L LV  S S D LR H+S+
Sbjct: 422 ICPAPQ-RVPMQMVHNTVFNQTSLLLVQDSCSLDILRIHISN 462


>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400) (2
           weak); similar to Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 815

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 232 ICFMPSLKTSKQKYHSSNLNKTYLNLVTYSSS*DFLRSHVSS 107
           IC  P  +   Q  H+S  NKT L LV   S+ D LR ++SS
Sbjct: 424 ICPAPQ-RIPMQMVHNSMFNKTSLLLVQGISTLDILRLNISS 464


>At2g42180.1 68415.m05220 expressed protein
          Length = 166

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 214 LKTSKQKYHSSNLNKTYLNLVTYS 143
           LK S    HS+NL   ++NL+T+S
Sbjct: 3   LKRSSSSSHSTNLKTLFINLITHS 26


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,155
Number of Sequences: 28952
Number of extensions: 285987
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)