Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0114
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    30   0.40 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   3.8  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.7  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    25   8.7  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 413 SCGKKKLTIVSTEIMRYEFTFTWLRSQKQFAKNYIYKAISYLCVKLGINHF--CIKKDVW 586
           +C KKK+T+++T    Y+F   + R  KQ     I +     C+ +G+N+F  CI ++V+
Sbjct: 128 NCNKKKITLIATGGGAYKF---YDRMSKQLDIKVI-REDEMECLIMGLNYFVSCIPREVF 183


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 481 PCKSKFIPHYLRTNYGKLFFSTG 413
           P    F+PHY++    + FFS G
Sbjct: 389 PFAEYFVPHYIQNRMSQSFFSVG 411


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 482 LRSQKQFA-KNYIYKAISYLCVKLGI-NHFCIKK 577
           L+++  F  KN I+ AIS LC K  + N  C KK
Sbjct: 9   LQTKSDFTLKNLIFFAISTLCYKRALFNENCYKK 42


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 509 NYIYKAISYLCVKLGINHFCIKKDVW 586
           NYI++A  Y  ++ GI  + +KK  W
Sbjct: 320 NYIFRASKYTHMEEGILEWSVKKLAW 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,639
Number of Sequences: 5004
Number of extensions: 62779
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)