Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0114
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0683 + 24260627-24260759,24262408-24262610                       30   1.7  
03_05_0266 + 22537578-22538081                                         29   5.2  
11_06_0134 + 20454405-20455121                                         28   9.1  
03_06_0746 + 35961431-35961488,35963941-35964021,35964650-359647...    28   9.1  
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601...    28   9.1  

>01_05_0683 + 24260627-24260759,24262408-24262610
          Length = 111

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 SASTLSRRLNSPDWAPARSKVGRRL*AAGVFSEVQ 365
           SAS ++RRLN  DW P  +   RRL A  + S VQ
Sbjct: 61  SASFVTRRLNDWDWGPVSNGGNRRL-ATRIESSVQ 94


>03_05_0266 + 22537578-22538081
          Length = 167

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 377 GMWELNLTKNSCRSQPAPYLGPGRSPVGAIETAGQG*RR 261
           G W+   T       PAP + P  +P G +   G G RR
Sbjct: 14  GSWQPAATSTPATVSPAPAVSPVAAPAGELGGGGAGARR 52


>11_06_0134 + 20454405-20455121
          Length = 238

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 SASTLSRRLNSPDWAPARSKVGRR 332
           SA  L+RR   P+W P R +  RR
Sbjct: 4   SAGALARRKGRPEWVPTRPRERRR 27


>03_06_0746 +
           35961431-35961488,35963941-35964021,35964650-35964713,
           35965538-35966216
          Length = 293

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -2

Query: 472 SKFIPHYLRTNYGKLFFSTGEXRLIPTRAAGGACGS*TSLKTPAAH----NRRPTLDRAG 305
           + +I  YL+  YGKL    G+    P   AGGA G        AAH    +  P  D  G
Sbjct: 73  ASYILSYLKNKYGKLAADGGQ-STAPGDDAGGAVGGSCRFGGCAAHGGGRSTAPGDDAGG 131

Query: 304 AQSG 293
           A  G
Sbjct: 132 AAGG 135


>03_02_0157 +
           6008840-6008908,6009795-6009932,6010921-6011014,
           6011313-6011361,6015190-6015265,6015466-6015558,
           6015786-6015851
          Length = 194

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 211 PSKRALGPLNGGMDVCALRQPCPAVSIAPTGLRPGPR 321
           P+   LGP  G    C   QP P VS  PT     PR
Sbjct: 60  PTDHPLGPFQGPCTDCRRNQPLPLVS--PTSNEGSPR 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,453
Number of Sequences: 37544
Number of extensions: 459415
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)