Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0114
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    28   6.2  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/83 (28%), Positives = 28/83 (33%)
 Frame = -1

Query: 422 FHRRKXPDPHPRGRWGMWELNLTKNSCRSQPAPYLGPGRSPVGAIETAGQG*RRAHTSIP 243
           +H+ + P P     WG W  N      R  P P  GP   PV       QG  R +   P
Sbjct: 50  WHQPRHPGPPAHQDWGDWSAN-RDEQWRGPPGP-SGPSGPPV----YHNQGPPRGYPPPP 103

Query: 242 PFSGPRARFDGTMVSLGHFYADG 174
           P      R        GHF   G
Sbjct: 104 PQGADTWRGAPPPAHHGHFGPPG 126


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 448 GDNEV*IYFYMAS*PKTIREKLYLQSHLLSMCKTRHKPFLH*KRCVVSW 594
           G+ EV + FY+       ++KL L+S L+  C+  ++ F+H    V SW
Sbjct: 569 GNKEVLVEFYLN------KQKLQLESGLVPSCQKNNRLFVHHDFPVASW 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,217
Number of Sequences: 27780
Number of extensions: 371272
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)