Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0114
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66780.1 68414.m07591 MATE efflux family protein contains TIG...    31   0.82 
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    29   2.5  
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    28   5.8  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    28   7.6  

>At1g66780.1 68414.m07591 MATE efflux family protein contains
           TIGRfam profile: TIGR00797: MATE efflux family protein,
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 485

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +2

Query: 386 RAGGDQAXFSCGKKKLTIVSTEIMRYEFTFTWLRSQKQFAKNYIYKAISYLCVKLGINHF 565
           R+  + A F  G     IVS  +  Y   + ++ S +    +Y+ +   +LC+ +G++ F
Sbjct: 336 RSAANSAIF-LGMIDAAIVSISLYSYRRNWAYIFSNESEVADYVTQITPFLCLSIGVDSF 394

Query: 566 CIKKDVWCRGT 598
                   RGT
Sbjct: 395 LAVLSGVARGT 405


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -3

Query: 156 KHTKIALAYIKN*QLKTN*SVELKFFTDF*YRD 58
           +HT + L  +KN +L+ N S EL FFT F Y+D
Sbjct: 747 EHTCMLLKPLKNDELEVNESDELGFFTPF-YKD 778


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 394 WGSGXFLLWKKKAYHS*YGDNEV*IYFYMAS*PKTIREKLYLQSHLLSMCKTRHKPFLH 570
           WG G    W+KK  +    +  V ++ +M+S  + ++  + L S LL      H  FL+
Sbjct: 2   WGIGGNYYWRKKNNNGGESEAIVVVFAWMSSEERNLKNHVDLYSSLLWDSLVCHSQFLN 60


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
            protein low similarity to SP|P46825 Kinesin light chain
            (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
            TPR Domain
          Length = 1797

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 343  AAHNRRPTLDRAGAQSGLLRRRDRVDAEHIHPSHRSAGRE 224
            AA N  P  D + A  G L   D +D  +I+PSH + G+E
Sbjct: 1109 AARNGTPKPDASIASKGHLSVSDLLD--YINPSHNAKGKE 1146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,105
Number of Sequences: 28952
Number of extensions: 340661
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)