Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0112
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   2.1  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   5.0  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   6.6  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   6.6  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   8.7  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   8.7  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = -2

Query: 403 HVRPVSTVNEH-------ENWRFIREVGTENVQLLSGR*SVL---NLQFVWNVI 272
           H+  + TV+ H       +N RF+ E GTE++ L+ G   V    N Q+VW+ +
Sbjct: 61  HLNKLRTVHGHARNFVKADNSRFVDEKGTEHLDLIGGVGVVTVGNNNQYVWDCL 114


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +2

Query: 113  PLSTLKDTGDGHHGICGFGKRIHTGAVVEPVIYPGASPQLAHQPCNSKSEIATNNVPHKL 292
            P+S    TG G     G G  ++  + V   I+  A          S  +I  +N PH +
Sbjct: 1679 PVSAYVFTGQGSQEQ-GMGMDLYASSPVARKIWDSADKHFLTNYGFSIIDIVKHN-PHSI 1736

Query: 293  EIEYGSTPGQKL 328
             I +G + G+K+
Sbjct: 1737 TIHFGGSKGKKI 1748



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 632  VSEFLSKTRPDFTP-PSKGAFPYFQGLYDLTGKVR 733
            V++   K  P+ T  P + +  YFQ +YDLTG  R
Sbjct: 2025 VAKLRGKYIPNLTAKPFEISKEYFQNVYDLTGSQR 2059


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 591 CPAKVNASRIHLLSVFEDVSRSVLYLIETSASVTAGQRS*PTIIV 457
           C +K   S  H L    D+S ++ Y IE   SVT+   S  ++++
Sbjct: 287 CVSKKAPSASHFLQSCPDLSATIFYDIEAYMSVTSSLPSIQSLVL 331


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 588 DTERERIW*RNFLGQFPNFFRKHGPISH 671
           DTE + +W   F   +PN  R  G +SH
Sbjct: 883 DTEEKELWNNLFEDWYPNRARDPGTLSH 910


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +2

Query: 566 LEAFTFAGHGTGAHLVAKLPGPVSEFLSKTRPDFTPPSKGAFPYFQ 703
           LE     GH     + AK+   +  F  + +P   PP  GA P  Q
Sbjct: 296 LEILPETGHFVHEDVPAKISSLLLNFWHRNQPLVLPPKVGATPVLQ 341


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 541 FEYAEKMNSRGVYFRGTRNGSASGSETSWASFRISFENTARFHTTFQGSLSLFSGTVRLN 720
           FE A+   ++    R TRN  ++   ++  S + +F N  R    F+     F   VR +
Sbjct: 205 FEDAKDKEAKKAQLRKTRNEVSNMLRSTLKSGKFTFSNETRESKEFRD----FFQKVRTS 260

Query: 721 GESP 732
           G+SP
Sbjct: 261 GQSP 264


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 110 KKHIKLKVQSCL*TSLGRSCACSLQTL 30
           KKH+  +VQ C+  ++    AC L ++
Sbjct: 280 KKHLDAEVQKCIDNNISSMLACMLDSV 306


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 265 YFALAVTRLMCKLRRCSGVYNRFDHSTGVYSLSKST 158
           +F L  T ++C +++CS     F   T  +SLSK T
Sbjct: 27  FFLLCFTVMLCVVQQCSSAMTSFRCPT--FSLSKYT 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,987
Number of Sequences: 5004
Number of extensions: 77562
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)