Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0112
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 30 2.2
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 30 2.2
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 29 3.0
09_04_0413 + 17372852-17373787 29 3.9
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 3.9
11_01_0538 + 4265540-4265896 28 6.9
12_01_0929 - 9229172-9229483,9230009-9230359 28 9.1
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 9.1
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 324 SWTFSVPTSRMNLQFSCSFTVDTGRTCLVKYHVIQQNPSTPPALRQ*LLVMI 479
SW +++PT + + SC + T + Y+VI +P+ +Q LL+++
Sbjct: 647 SWAYTIPTWILKIPISC---FEVAITVFLSYYVIGFDPNVGRLFKQYLLLLL 695
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 302 YGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 394
YG P +LD++ D SP++ F+ GG W
Sbjct: 192 YGDQPRNRLDLYIPRDPKKPSPVVAFVTGGAW 223
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 221 SPQLAHQPCNSKS-EIATNNVPHKLEIEYGSTPGQKLDIFGTDLPNESPILVFIHGGYWP 397
SP + QP S +N P + G Q +G P++S VF HGGY+P
Sbjct: 311 SPAASPQPAGGVSGPFGQSNFP----MASGMQSPQHRPFYGFGTPSDSYGRVFSHGGYFP 366
Query: 398 DVSREISRYPAKSL 439
+ +P+ L
Sbjct: 367 QATNYGGPFPSFGL 380
>09_04_0413 + 17372852-17373787
Length = 311
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Frame = +2
Query: 206 IYPGASPQLAHQPCNSKSEI-ATNNVPHKLEIEYGSTPGQKLDIFGTDLPNES---PILV 373
IY H P + + + A V K ++ + G + +F P+ S P+LV
Sbjct: 18 IYRSGKMDRLHHPVLAPAGVDAATGVTSK-DVVVDADTGLSVRVFLPARPDPSKKLPVLV 76
Query: 374 FIHGGYW---PDVSREISRYPAKSLYPAGVKTIIVGYDLCP 487
F HGG + S Y A AGV + V Y L P
Sbjct: 77 FFHGGAFVIESAFSTTYHGYAASLAAAAGVVAVSVEYRLAP 117
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 727 FPR*VVQSLKIRKGSLGRWCEIGPCFRKKFGNWPRKF-RYQMRSRSVSRESK 575
FPR +QSL+ K S+ C PC K + P Y ++S R K
Sbjct: 353 FPRYPLQSLRADKSSIKGGCSYPPCICKSSTSKPENLSHYPVQSLQADRSLK 404
>11_01_0538 + 4265540-4265896
Length = 118
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 627 PGSFATRCAPVP-CPAKVNASRIHLLSVFEDVSRS 526
PGS AT C P+ C +++ A RI SVF D R+
Sbjct: 60 PGS-ATLCRPLAGCRSRIPACRIKCKSVFRDPGRA 93
>12_01_0929 - 9229172-9229483,9230009-9230359
Length = 220
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 535 YIFEYAEKMNSRGVYFRGTRNGSASGSETSWAS 633
YI++ A +N +Y NGS+SGS +S +S
Sbjct: 12 YIYKEAGSLNLENMYHSWGSNGSSSGSGSSTSS 44
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 173 RIHTGAVVEPVIYPGASPQLAHQPCNSKSEIATNNVPHKLEIE 301
++H G ++YP +P + C +EI NV +L IE
Sbjct: 1408 KVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIE 1450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,885
Number of Sequences: 37544
Number of extensions: 523012
Number of successful extensions: 1421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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