Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0112
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34491| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   30   2.3  
SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      29   3.0  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   4.0  
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              29   5.3  
SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_46366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_34491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +2

Query: 422 YPAKSLYPAGVKTIIVGYDLCPAVTLAEVSIRYRTLRDTSSNTLRR*ILEAFTFAGHGTG 601
           YPA S   AG  + ++ YDL P VTL E+  +    ++      ++         GH  G
Sbjct: 19  YPAVS---AGAVSAVIDYDLLPTVTLDEIVAQ---TKEALQFIAKKFPNSRLYLGGHSAG 72

Query: 602 AHLVAKL 622
           AHLVA +
Sbjct: 73  AHLVAMM 79


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 253 AVTRLMCKLRRCSGVYNRFDHSTGVYSLSKSTNSMVTVP-CIFQSTQRLKNI 101
           A   + C+L   + +   FD++  ++SL  S+N +  +P  +F+    +KN+
Sbjct: 4   ATVDVKCRLTNLTELRKHFDNTDRIHSLDLSSNQLKIIPEFVFRGFSNVKNL 55


>SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 326 LDIFGTDLPNES-PILVFIHGG 388
           LDI+  ++ N S P++VFIHGG
Sbjct: 102 LDIYAPNITNSSIPVMVFIHGG 123


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 182 TGAVVEPVIYPGASPQLAHQPCNSKSEIATNNVPHKLEIEYGSTPGQKLDIFGTDLPNES 361
           TG   E ++  G +   A  P     E+A     +K  I     PG+KL+I   D    +
Sbjct: 77  TGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNLYKNYITDYLEPGRKLNISDGDYDAVA 136

Query: 362 PILVFIHGGYWPDVSREISRYPAKS 436
            + VF  G    + + +  RYP ++
Sbjct: 137 CVGVFTKGHVTAEAAMDEMRYPLRT 161


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 662 RAVFSKEIRKLAQEVSLPDALPFRVPRK*TPLEFIFSAYSKMY 534
           R  F + +R+L Q      A P   PR   PL+F+FSA +  Y
Sbjct: 827 RPKFDELLRRLKQVKEQVGATPSPNPRHLGPLDFVFSAKTPTY 869


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 326 LDIFGTDLPNES-PILVFIHGG 388
           LD++  ++ N S P++VFIHGG
Sbjct: 103 LDVYAPNITNSSLPVMVFIHGG 124


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 388 STVNEHENWRFIREVGTENVQLLSGR*SVLNLQFVW 281
           +T+  H  W+ IR   T N   ++GR + LN+ F W
Sbjct: 51  TTMAPHSCWKTIRPTPTINGFRMAGRRNSLNVSFSW 86


>SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 722 PLSRTVPENKERLPWKVV*NRAVFSKEIRKLAQEVSLPDA 603
           P SR  P N  RL W +  + A  ++ IR+   E  L DA
Sbjct: 716 PDSRNAPSNHGRLVWTMFDSAAELTQTIRQAESERQLRDA 755


>SB_46366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 119 STLKDTGDGHHGICGFGKRIHTGAVVEPVIYPGAS 223
           S  ++ G+    ICG    +HTG++ + V +PGA+
Sbjct: 80  SAQQNCGNDVDKICGDRCDVHTGSIAQLVKFPGAN 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,051,119
Number of Sequences: 59808
Number of extensions: 620662
Number of successful extensions: 1490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)