Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0112
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    45   7e-05
AL021488-6|CAA16366.2|  272|Caenorhabditis elegans Hypothetical ...    32   0.38 
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    31   0.87 
Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = +2

Query: 278 VPHKLEIEYGSTPGQKLDIFGTDLPNESPILVFIHGGYWPDVSREISRYPAKSLYPAGVK 457
           +P K  + YG    QK+DI+G D  ++  +L+FIHGGYW   +R+    PA+        
Sbjct: 43  IPRKENVAYGMEENQKVDIWG-DASDK--LLIFIHGGYWAAGTRKDCLTPARCALNNEYA 99

Query: 458 TIIVGYDL 481
              VGY L
Sbjct: 100 FASVGYGL 107


>AL021488-6|CAA16366.2|  272|Caenorhabditis elegans Hypothetical
           protein Y45F10A.3 protein.
          Length = 272

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/96 (23%), Positives = 37/96 (38%)
 Frame = +2

Query: 323 KLDIFGTDLPNESPILVFIHGGYWPDVSREISRYPAKSLYPAGVKTIIVGYDLCPAVTLA 502
           ++DI+G +   +  + + IHGGYW   +R+            G   + VGYD      + 
Sbjct: 58  RIDIWGPETAEK--VFIMIHGGYWLIGNRKKCLAVVHVAQKLGYTVVSVGYDYANKDHVL 115

Query: 503 EVSIRYRTLRDTSSNTLRR*ILEAFTFAGHGTGAHL 610
             +I    L        +    +     GH  GAHL
Sbjct: 116 SKTI-VEALEGVQFALKKFKNAKKIVIGGHSVGAHL 150


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +2

Query: 206 IYPGASPQLAHQPCNSKSEIATNNVPHKLEIEYGSTPGQK---LDIFGTDLPNES----P 364
           ++PG  P LA     S ++    +    ++  Y     +    L+IF  D+   +    P
Sbjct: 132 VFPGKQPYLAFNYAASCAQDVEKSPSPFVDHPYPFMVDEDCLYLNIFSPDISKNAQTTYP 191

Query: 365 ILVFIHGGYWPDVSREISRYPAKSLYPAGVKTIIVGYDL 481
           ++VF HGG +   S   + +PA  L   G+  + V Y L
Sbjct: 192 VIVFFHGGNFQTGS--ANEWPAHGLASRGMVVVTVNYRL 228


>Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical
           protein F11E6.8 protein.
          Length = 442

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 338 GTDLPNESPILVFIHG-GYWPDVSREISRYPAKSLYPAGVKTI 463
           G  LP+E+ +L  I G GY+ +V R   R PA  L P  VKT+
Sbjct: 128 GLLLPSEAVVLETIVGKGYFGNVYRGRMRDPAGRLIPVAVKTL 170


>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 350 PNESPILVFIHGGYWPDVSREISRYPAKSLYPAGVKTIIVGYDLCPAVTLAEVS 511
           PN  P  V I G  WP + +  +   AKS+       +I  Y  C    L  ++
Sbjct: 53  PNGHPKQVVIDGEIWPPIFKPKNVRTAKSMQFGETDVVIATYPKCGTTWLQHIT 106


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 666 KSGRVFERNSETGPGSFATRCAPVPCPA 583
           K G      S + P + +T CAP+P PA
Sbjct: 301 KDGSSLNCTSCSSPTTISTNCAPIPAPA 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,953,630
Number of Sequences: 27780
Number of extensions: 444844
Number of successful extensions: 1164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)