Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0112
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        23   3.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.3  

>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/50 (20%), Positives = 19/50 (38%)
 Frame = +2

Query: 326 LDIFGTDLPNESPILVFIHGGYWPDVSREISRYPAKSLYPAGVKTIIVGY 475
           LD++   L    P++ ++H G +   +          L P  V  +   Y
Sbjct: 7   LDVYTNSLDQSKPVMFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNY 56


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 194 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 111
           PQH       I+K +G  P  + KYS++
Sbjct: 383 PQHLIHPGKDINKLYGMTPSDIDKYSRI 410


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 194 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 111
           PQH       I+K +G  P  + KYS++
Sbjct: 383 PQHLIHPGKDINKLYGMTPSDIDKYSRI 410


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 599 GAHLVAKLPGPVSEFLSKTRPDFT 670
           G H++   PG + +F+ K R  F+
Sbjct: 323 GCHILVATPGRLLDFVEKGRVKFS 346


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 194 PQHRCVFSFQIHKFHGDRPLYLSKYSKV 111
           PQH       I+K +G  P  + KYS++
Sbjct: 321 PQHLIHPGKDINKLYGMTPSDIDKYSRI 348


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 102 YKIEGPILFINKPGSVVRVLTSNSCKTH 19
           YKIEG +L +   G+    +T    K+H
Sbjct: 131 YKIEGKVLLLPVRGAGKSNITMYDLKSH 158


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 371 RELEIHSGGRYRKCPASVRALIRT 300
           R + IH+G R  KC    +  I++
Sbjct: 165 RHMRIHTGERPHKCTVCSKTFIQS 188


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 183 PVLWSNRLYTPEHRLNLHINLV 248
           PV+WSN L T EH  ++ I  +
Sbjct: 473 PVIWSNDLAT-EHDRSVMIQAI 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,921
Number of Sequences: 438
Number of extensions: 5618
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)