Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0112
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21200.1 68416.m02679 expressed protein                             30   1.4  
At5g15860.2 68418.m01856 expressed protein                             29   4.3  
At5g15860.1 68418.m01855 expressed protein                             29   4.3  
At1g65430.1 68414.m07423 zinc finger protein-related contains we...    29   4.3  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    29   4.3  
At5g67230.1 68418.m08474 glycosyl transferase family 43 protein ...    27   10.0 
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2...    27   10.0 
At3g23880.1 68416.m03001 F-box family protein contains F-box dom...    27   10.0 
At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    27   10.0 
At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transfera...    27   10.0 

>At3g21200.1 68416.m02679 expressed protein
          Length = 317

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 165 LEREYTPVLWSNRLYTPEHRLNLHINLVTARAK*PQIT 278
           ++++ TPVL  NR  +P+ R  LH+ L     + PQ T
Sbjct: 95  VDKDGTPVLCLNRSVSPDKRSALHVQLEQCGLRTPQCT 132


>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 296 IEYGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 394
           I YG  P  +LD++  ++     P++VF+ GG W
Sbjct: 133 IVYGDQPRNRLDLYLPSNNDGLKPVVVFVTGGAW 166


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 296 IEYGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 394
           I YG  P  +LD++  ++     P++VF+ GG W
Sbjct: 133 IVYGDQPRNRLDLYLPSNNDGLKPVVVFVTGGAW 166


>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
           similarity to zinc finger proteins and a Pfam:PF01485
           IBR domain
          Length = 567

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 630 GPGSFATRCAPVPCPAKVNASRIHLLSVFEDVSRSVLYLIET 505
           GPG    RC    C A V    I+LL+  +D  +   Y + +
Sbjct: 165 GPGCLTLRCPDPSCRAAVGQDMINLLAPDKDKQKYTSYFVRS 206


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 630 GPGSFATRCAPVPCPAKVNASRIHLLSVFEDVSRSVLYLIETSASV 493
           GPG    +C    CPA +    I  L+  ED  +   Y + +   V
Sbjct: 169 GPGCLMLKCPDPSCPAAIGRDMIDKLASKEDKEKYYRYFLRSYVEV 214


>At5g67230.1 68418.m08474 glycosyl transferase family 43 protein low
           similarity to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Homo sapiens
           [SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
           Pfam domain Glycosyltransferase family 43 [PF03360]
          Length = 492

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 26/85 (30%), Positives = 33/85 (38%)
 Frame = -3

Query: 684 PLEGGVKSGRVFERNSETGPGSFATRCAPVPCPAKVNASRIHLLSVFEDVSRSVLYLIET 505
           PLE    S    ++NS    G    R  P P P  +   R H L V     +  +Y    
Sbjct: 93  PLETATNS--TVKKNSRVVVGRHGIRIRPWPHPNPIEVLRAHQLLVRVQKEQKSMY---- 146

Query: 504 SASVTAGQRS*PTIIVLTPAG*RDF 430
                 G RS  T+IV+TP   R F
Sbjct: 147 ------GVRSPRTVIVVTPTYVRTF 165


>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
           HD-ZIP protein 2 identical to homeobox-leucine zipper
           protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
           SP:P46601; contains Pfam profiles PF04618: HD-ZIP
           protein N terminus, PF02183: Homeobox associated leucine
           zipper,  PF00046: Homeobox domain
          Length = 283

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 544 EYAEKMNSRGVYFRGTRNGSASGSETSWASFRISFENTARFHTTFQ 681
           ++ E    RG Y RGT +    G ETS    R+S + +A    TF+
Sbjct: 103 DHDEITPDRG-YSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFK 147


>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 550 AEKMNSRGVYFRGTRNGSASGSETSW 627
           A+K  S G+Y  GT N +A+ S +SW
Sbjct: 209 ADKSRS-GIYINGTLNWAATSSSSSW 233


>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 296 IEYGSTPGQKLDIFGTDLPNE-SPILVFIHGGYW 394
           I YG  P  +LD++     +   P++VF+ GG W
Sbjct: 128 IVYGGHPRNRLDLYIPPTSDGLKPVVVFVTGGAW 161


>At2g16890.2 68415.m01944 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 478

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 158 CGFGKRIHTGAVVEPVIYPGASPQLAHQPCNSKSEIATNNVPHKLEIEYGSTPG 319
           CG+     +  V  P++   A P +A QP N+K  +    V  ++E E GS  G
Sbjct: 361 CGWNSAQESICVGVPLL---AWPMMAEQPLNAKMVVEEIKVGVRVETEDGSVKG 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,617
Number of Sequences: 28952
Number of extensions: 416702
Number of successful extensions: 1179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)