Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0111
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   2.9  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.1  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   5.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   6.8  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    26   6.8  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   9.0  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 656 TWALGGFGCIRNMGLHKSIMV 718
           +W LG F CIR  G+H+S+ V
Sbjct: 41  SWNLGVFICIRCSGVHRSLGV 61


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 642 DILYXLGLWEDLVV*GTWDFTNPSWL*W 725
           DI + L LW    V G WD+   +W+ W
Sbjct: 4   DIFFYLALWVIQSVYGAWDWAK-NWVFW 30


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 680 CIRNMGLHKSIMVMMGVGEMEPWWWVIWK 766
           CIR + +   I  +  + ++EP+W  IWK
Sbjct: 368 CIRKLVIDNEIKDVEELTKIEPFWEEIWK 396


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 739 HFSHT--HHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           H +H   HHNHD     H  + + S+ S    ++    +H H
Sbjct: 17  HHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQFIQEHGH 58


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 410 TEKCPFIYLETLTKQVKDGSSYGEKNSIQQCLHFAGLAQKTYIRN 544
           T+K     +ET    V  G +Y   NS+   +HF G    +Y+ N
Sbjct: 179 TKKSIIKDVETPESYVSIGLNYVMSNSVSTKIHFVGSEYGSYLLN 223


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 250 FVKGNGLMQPLPGLVQGINSITNSQTITAVTWHSSS 143
           +V GNG++QPL  ++Q  +S ++   +   TW  S+
Sbjct: 199 YVLGNGVLQPLLNILQ--SSASDVSMLRNATWTLSN 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,623
Number of Sequences: 5004
Number of extensions: 68890
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)