Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0111
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0)                29   5.4  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.4  
SB_48893| Best HMM Match : CUB (HMM E-Value=0.11)                      28   7.2  
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H   +  H+  T  SS S S  +      H H
Sbjct: 446 PSTSSSQRHHHHPHHHHSAIITIHIIITAPSSPSTSSSQRHHHHPHHH 493



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H      H+  T  SS S S  + +    H H
Sbjct: 152 PSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHH 199



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H   +  H+  T +S  S S  +      H H
Sbjct: 250 PSTSSSQRHHHHPHHHHSAIITIHIIITAQSPPSTSSSQRHRHHPHHH 297



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H      H+  T  SS S S  + +    H H
Sbjct: 314 PSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHH 361



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  HT+H+H   +  H+  T  S  S S  +      H H
Sbjct: 120 PSTSSSQRHHHHTYHHHSAIITIHIIITVPSPPSTSSSQRHHHHPHHH 167



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H      H+  T  SS S S  +      H H
Sbjct: 380 PSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRHHHHPHHH 427



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPS 656
           P+      H  H HH+H   +  H+  T  S  S S
Sbjct: 88  PSTSSSQRHHHHPHHHHSAIITIHIIITAPSPPSTS 123



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 763 PNNPPPWLHFSHTHHNHDGFVKSHVPYTTKSSQSPSXYKISVD*DHEH 620
           P+      H  H HH+H   +  H+  T     +PS   IS+   H H
Sbjct: 510 PSTSSSQRHHHHPHHHHSAIITIHIIIT-----APSPPSISLSQRHHH 552


>SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0)
          Length = 373

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 349 TKLELSLICDVLDEHTNVLPHRRRXQPKRGRSVFVKGNGLMQPLPGLVQG 200
           T+ +L  +  VL  H+ +   +     +     F+KG+GL +  PG+V+G
Sbjct: 120 TEEQLLELAGVLGIHSMLTSEQSHQAEREASDRFLKGSGLKKYTPGIVKG 169


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 26.2 bits (55), Expect(2) = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 751 PPWLHFSHTHHNH 713
           PP  H+ H HHNH
Sbjct: 224 PPQHHYHHHHHNH 236



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 739 HFSHTHHNHD 710
           H+SH HH+ +
Sbjct: 236 HYSHNHHHRN 245


>SB_48893| Best HMM Match : CUB (HMM E-Value=0.11)
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 150 ECQVTAVIVWEFVIELIPCTKPGSGCIKPLPFTNTD 257
           E  +  + +   V   IPCT P   C  P+ FT  D
Sbjct: 5   EILLALIFIPSLVAAEIPCTNPKFSCTDPMLFTKLD 40


>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 196 NSITNSQTITAVTWHSSS 143
           +S++ S TITA+ WH SS
Sbjct: 288 HSVSQSDTITAIAWHPSS 305


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 LHQTIALHEYRSPSLRLXPTPVGQNISVFIKDI 322
           LH+ +  +  RSP      TPVG+ ++ F KDI
Sbjct: 653 LHERLLFNILRSPMSFFESTPVGRIVNRFSKDI 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,560,068
Number of Sequences: 59808
Number of extensions: 517199
Number of successful extensions: 1305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)