Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0111
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50030.1 68416.m05470 hypothetical protein                          29   4.5  
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           28   7.8  
At4g12060.1 68417.m01918 Clp amino terminal domain-containing pr...    28   7.8  
At2g18060.1 68415.m02100 no apical meristem (NAM) family protein...    28   7.8  

>At3g50030.1 68416.m05470 hypothetical protein 
          Length = 501

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 445 NETSERWLKLW*KE*YPAVLALCWSCTENIYKKCCGIQQSGRIK 576
           +E S   + L+ +E     + +  +C +N+YK   G++  GR+K
Sbjct: 156 HEKSFEAVSLFEEEIVKLAMEIATNCLKNVYKSFLGVEDRGRLK 199


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 202 GINSITNSQTITAVTWHSSSWMQDQQ*NHSTNEH 101
           GI   + + TI   T+H++S  QD   +H  N+H
Sbjct: 2   GITKTSPNTTILLKTFHNNSMSQDYHHHHHHNQH 35


>At4g12060.1 68417.m01918 Clp amino terminal domain-containing
           protein contains Pfam profile: PF02861 Clp amino
           terminal domain
          Length = 241

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 711 MDL*SPMFLIQPNPPRAQVRIKYQSIETMNTDLVIS 604
           + L SP+  +Q N PR   +    S+ T N DLV+S
Sbjct: 52  LSLTSPVSALQTNRPRRIHKSAISSLPTANPDLVVS 87


>At2g18060.1 68415.m02100 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 365

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 268 KRGRSVFVKGNGLMQPLPGLVQGINSITNSQTI 170
           K+  ++F KG    Q L G+V GIN I ++Q I
Sbjct: 196 KQQHNIFGKGLMCKQELEGMVDGINYIQSNQFI 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,234
Number of Sequences: 28952
Number of extensions: 373146
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)