Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0108
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    27   2.9  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   3.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.1  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 147 ADYDSAVERSKLIYTDNKGELITNVVNNLXRNNKMNAWSTPTSSGCKAPRTSSGIVSR 320
           A  +S+   S L+  +N+G  +   +  L   +K   W+   S   +A R  S  +S+
Sbjct: 39  ASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWANKLSKSLQARRRKSESISK 96


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 150 DYDSAVERSKLIYTDNKGELITNVVNNLXRNNKMNAWSTPTS 275
           D D   + SKL Y D +G+  TN  N+L  + + +  S P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 261 STPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGP 440
           STP S+    P + S   SRLSS L+      S+   ET      +     PTG++  G 
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQGS 784

Query: 441 V 443
           V
Sbjct: 785 V 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,556
Number of Sequences: 5004
Number of extensions: 56134
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)