Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0108
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)                    32   0.58 
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   4.1  
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   4.1  
SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)                       28   7.2  

>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
          Length = 841

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 633 KREPRYHWAPKTH-RKXSDPVSPCGRPFLLVRTFNAQVLFAL 511
           +R PR+HWAP++H R  ++P +   R   + R ++ +  F L
Sbjct: 799 RRLPRFHWAPRSHERAQTEPANTGERSSRVSRMYSFEPEFGL 840


>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 330 VNSTGKQSRTMSSEP-CIQSW*AYSMRSSCC 241
           VNS G  S  +SSEP C+Q++   S    CC
Sbjct: 641 VNSNGSLSNPLSSEPQCVQTYGGNSNVGKCC 671


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 367 QARRSRFYIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGL--LQDREPERKQNL 528
           + RR +   ERQ R      ++Q+Q + QLE+     EQQ    LQ R+ E KQ +
Sbjct: 637 ERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRM 692


>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 126 LYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLXRNNKMNAWSTPTSSGCKAPR 296
           +Y  +I +   + +       TD +  L+  ++N + R  KM+AW  P+S   K  R
Sbjct: 211 IYKKIIGSRQSAGIRLQGSRITDRRITLVREIINGI-RTVKMHAWEKPSSDIVKRTR 266


>SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 386 FTLSDNGGVAYGDSKDRTSSRV-SWKFIPLWENNKVYFKIENLSANR 523
           FTL D+    YG+ K+   S+V S   + L  +NKVY   E+L+ +R
Sbjct: 101 FTLRDDRNKFYGNRKEIAGSKVSSISSLALESDNKVYIS-ESLTPSR 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,191,907
Number of Sequences: 59808
Number of extensions: 451985
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)