Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0107
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    31   0.25 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    28   1.4  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   3.1  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   3.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.5  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.5  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.2  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   7.2  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.5  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 3   NSAREQVIAGIHYRMKVEVGLTNCTALTNRSDCKHISDESLNKFCRVNVWMRPWTN 170
           N+  ++V+ G+   +K+ V   N T L  +SD  H+ DE L+    +  +   WT+
Sbjct: 338 NNVSQEVVNGV---VKLSVYKGNVTVLGRKSDTAHLYDEKLSSMDELGGFDPTWTS 390


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 511 QLRDFCLPHWNLIGISQTRFQAKIFLSKLFIGQIGEL 401
           + RD  L +   +G+S  +FQ    L KLF   IGEL
Sbjct: 97  EYRDMSLENLTKMGVSAAKFQTTEELRKLFPKWIGEL 133


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +3

Query: 150 WMRPWTNHPPNFRVTCDYQESATIDLYHHIQAEHLFMIFWRHTNRI 287
           W  PW+   P + + C    SA +     I +  + + F  H N +
Sbjct: 335 WDSPWSKGRPGWHIECSVMASALLGSNIDIHSGGIDLAFPHHDNEL 380


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRK 349
           DFL   KP   D+A E+ R+ E+  G++ K
Sbjct: 39  DFLNMDKPLTADEAFELDRKVELPNGSIHK 68


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 75  TALTNRSDCKHISDESLNKFCRVN 146
           +A +  SDC H   E +  FC +N
Sbjct: 585 SASSENSDCPHKEGECVGSFCNIN 608


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 404 FADLSYEEFGKKYLGLKPSLRDTNQIPMRQAEIPKLKSPINSIGAIMTQSPDVKD 568
           F+ L+Y       L L+ + RD      +Q+  P+L   +N++ A  ++    +D
Sbjct: 558 FSKLAYTRIKSSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTED 612


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -2

Query: 296 RLCNSVCVSPKNHKQMFSLYVVVQINCCAFLIIACHSEVRWMICPGSHPN 147
           R+ N + + PK  +     ++V  I+CC      CH+ + W       P+
Sbjct: 46  RVENVIEMEPKTEQMSTGRFIVRHIHCC-----RCHTYIGWKYVSSYEPS 90


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 401 QFADLSYEEFGKKYLGLK 454
           + +DLSYEEF KKY   K
Sbjct: 162 KLSDLSYEEFLKKYSSTK 179


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 75  TALTNRSDCKHISDESLN-KFCRVNVWMRPWTNHPPNFRVTCDYQESAT 218
           T +     C H++ +    +FC V   + PWT H  N+     Y+E ++
Sbjct: 296 TTIEKNGGCNHMTCKKCKYEFCWV--CLGPWTEHGNNWYTCNRYEEKSS 342


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 219 IDLYHHIQAEHLFMIFWRHTNRI 287
           +DL H + A HL  I  +HT +I
Sbjct: 130 VDLSHGVTASHLAAIVEKHTGKI 152


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 689 YHSPPALAQRSDSSCPVFNLY*PSTLPVTLKAPASFRTYPGL*HRVTAS*SRQSNLSGIS 510
           Y + P++   + ++ PV      ST+PV   AP+S    P   H+  A   R  + SG  
Sbjct: 766 YQTQPSVTNNNVATQPVI----ASTVPVQTAAPSSQTAVPQTIHQSNAFTPRGKHASGSR 821

Query: 509 TS 504
            S
Sbjct: 822 NS 823


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 657 TSLSKSWWTVINLDEGCNGGVYLINAYR 740
           TS+SK+WW+   +   C  G ++ N+Y+
Sbjct: 9   TSISKNWWSASLVPVAC--GWFIGNSYK 34


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 150 KRSRGKIYSSSRH*YVYNPIDSSKLYNSSG 61
           K +    Y SS   Y  + +DSS  YNS+G
Sbjct: 663 KETSSPAYVSSTVSYTSSSVDSSSTYNSTG 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,443
Number of Sequences: 5004
Number of extensions: 69711
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)