Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0107
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)          52   4e-07
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.051
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.051
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          35   0.089
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                34   0.12 
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 33   0.21 
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.21 
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)                     32   0.47 
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        28   7.7  

>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
          Length = 504

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +2

Query: 263 FLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGITQFADLSYEEFGKK 439
           FL  +K +Y D+  E R R +IF+ N+RK  ++   + GTA YG T F+DLS EEF K+
Sbjct: 181 FLKKYKKSYQDET-EYRHRMKIFESNMRKAAKMQKMDSGTARYGPTIFSDLSEEEFRKQ 238


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 460 FARYQSDSNEAGRNPE-VEIPDKFDWRDYDAVTRC*RPGYVRKLAGAFSVTGNVEGQYKL 636
           ++ Y      A   P  V++PD  DWR    VT     G       AFS TG++EGQ   
Sbjct: 314 YSNYTKKQGSAFLAPSHVQVPDTVDWRKEGYVTPVKNQGQCGS-CWAFSTTGSLEGQNFK 372

Query: 637 KTGQ 648
           KTG+
Sbjct: 373 KTGK 376


>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +2

Query: 233 PHTS*TFVYDFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQF 406
           PH    F  +F   H   Y DD+ E RRR  IF+ NVR I  +N   R +  Y +    F
Sbjct: 480 PHLDDDFD-EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMN---RRSLPYKLEPNHF 534

Query: 407 ADLSYEEFGKKYLG 448
           ADL+ +EF K Y G
Sbjct: 535 ADLTDDEF-KSYKG 547


>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFG 433
           +F   H   Y DD+ E RRR  IF+ NVR I  +N   R +  Y +    FADL+ +EF 
Sbjct: 46  EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMN---RRSLPYKLEPNHFADLTDDEF- 100

Query: 434 KKYLG 448
           K Y G
Sbjct: 101 KSYKG 105



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 511 EIPDKFDWRDYDAV 552
           E+PDK DWRDY  +
Sbjct: 195 EVPDKLDWRDYGKI 208


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFG 433
           +F   H   Y DD+ E RRR  IF+ NVR I  +N   R +  Y +    FADL+ +EF 
Sbjct: 145 EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMN---RRSLPYKLEPNHFADLTDDEF- 199

Query: 434 KKYLG 448
           K Y G
Sbjct: 200 KSYKG 204


>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFG 433
           +F   H   Y DD+ E RRR  IF+ NVR I  +N   R +  Y +    FADL+ +EF 
Sbjct: 217 EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMN---RCSLPYKLEPNHFADLTDDEF- 271

Query: 434 KKYLG 448
           K Y G
Sbjct: 272 KSYKG 276


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
 Frame = +2

Query: 254 VYD-FLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGITQFADLSYEEF 430
           V+D ++  HK NY D+     RR E FK N+R IH  N    G  +  +    D S +E 
Sbjct: 555 VFDKYVKKHKKNYKDNKEHHTRR-EHFKHNLRFIHSKNRRHAGYYL-AMNHLGDRSDKEL 612

Query: 431 GKKYLGLKPSLRDTNQIPMR--QAEIPKLKSPINSIGAIMTQSPDVKDQGMCGS-WLGPL 601
            +   G + +      +P +   A I  +   +N +  I      VKDQ +CGS W    
Sbjct: 613 -RVLRGRRYTKGYNGGLPYKPDMASINDVPDEMNWV--IRGAVTPVKDQAVCGSCWSFGT 669

Query: 602 ALLVMSRVNIS*RLDSCCHFSEQELVDC 685
              +   + +  +       S+Q L+DC
Sbjct: 670 TGTIEGTLFL--KTKYLTRLSQQNLMDC 695


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGITQFADLSYEEFGKK 439
           +F   H   Y DD+ E RRR  IF+ NVR I  +N       +  +  F DL+ +EF K 
Sbjct: 46  EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMNRRSLPYKL-ELNHFPDLTDDEF-KS 102

Query: 440 YLG 448
           Y G
Sbjct: 103 YKG 105


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = +1

Query: 508 VEIPDKFDWRDYDAVTRC*RPGYVRKLAGAFSVTGNVEGQYKLKTG 645
           V+IP   DW     VT     G       AFS TG+VEGQ+  KTG
Sbjct: 41  VKIPSSVDWSQKGYVTGVKNQGQCGS-CWAFSTTGSVEGQHFRKTG 85


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 260  DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFG 433
            +F   H   Y DD+ E RRR  IF+ NVR I  +N   R +  Y +    FADL+ +EF 
Sbjct: 1196 EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSMN---RRSLPYKLEPNHFADLTDDEF- 1250

Query: 434  KKY 442
            K Y
Sbjct: 1251 KSY 1253


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +2

Query: 260  DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGITQFADLSYEEFGKK 439
            +F   H   Y DD+   RR+  IF+ NVR I  +N       +     FADL+ +EF K 
Sbjct: 1288 EFRQQHDKMYEDDSEHCRRK-HIFRHNVRYIRSMNRRSLPHKLEP-NHFADLTDDEF-KS 1344

Query: 440  YLG 448
            Y G
Sbjct: 1345 YKG 1347


>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +2

Query: 293 DDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFGKKYLG 448
           +D +E RRR  IF+ NVR I  +N   R +  Y +    FADL+ +EF K Y G
Sbjct: 76  EDDSEHRRRKHIFRHNVRYIRSMN---RRSLPYKLEPNHFADLTDDEF-KSYKG 125


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 508 VEIPDKFDWRDYDAVTRC*RPGYVRKLAGAFSVTGNVEGQYKLKTGQ 648
           V++ D  DWR    VT     G       AFS TG +EGQ+  KTG+
Sbjct: 113 VKVVDSIDWRSKGYVTPVKNQGQCGS-CWAFSTTGALEGQHFRKTGK 158


>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
          Length = 234

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 260 DFLATHKPNYIDDAAEMRRRFEIFKGNVRKIHELNTHERGTAVYGI--TQFADLSYEEFG 433
           +F   H   Y DD+ E RRR  IF+ NVR I  +   +R +  Y +    F DL+ +EF 
Sbjct: 46  EFRQQHDKVYEDDS-EHRRRKHIFRHNVRYIRSM---KRRSLPYKLEPNHFGDLTDDEF- 100

Query: 434 KKYLG 448
           K Y G
Sbjct: 101 KSYKG 105


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 453 FKPRYFFPNSS*DKSANCVIPYTAVPRSCVFNS*IFLTLPLKISNLLR 310
           F P  F P +   +     +P+   PR C+     F+ + L +S +LR
Sbjct: 434 FDPERFSPEAKQARDPYTFLPFGHGPRDCIGKRFAFMEMKLVLSRILR 481


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 460 FARYQSDSNEAGRNPEVEIPDKFDWRDYDAVTR--C*RPGYVRKL 588
           F +Y + SN+   + E E+ DK   +    VTR  C  PG VR+L
Sbjct: 231 FVQYSAASNDPRSDKEFELSDKRVLKGPVVVTRNPCLHPGDVRRL 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,828,696
Number of Sequences: 59808
Number of extensions: 512619
Number of successful extensions: 1283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)