Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0107
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    34   0.002
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.82 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 453 FKPRYFFPNSS*DKSANCVIPYTAVPRSCVFNS*IFLTLPLKISNLLR 310
           F P  F P  + ++     +P++A PRSCV      L L + +S +LR
Sbjct: 460 FDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILR 507


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 171 DLSRVASKRSRGKIYSSS 118
           D+S++ +KR+  KIY+SS
Sbjct: 517 DISKLVNKRNNAKIYTSS 534


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 144 NVWMRPWTNHPPNFRVTCDYQESATIDLYHHIQAEHLFMIF 266
           N W+ P     P  RV     +S TID+Y  I    LFM+F
Sbjct: 342 NTWLDP---EYPMIRV--HKTQSQTIDIYSRIGFPILFMLF 377


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 496 RNPEVEIPDKFDWRDYDAVTRC*RPGYV 579
           +N E+   DK DW DY  V++  + G +
Sbjct: 488 KNTEI-FKDKSDWFDYSEVSKWVQKGQI 514


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 493 LPHW-NLIGISQTRFQAKIFLSKLFIGQIGELRYSIYGGTAFVCIQFVNFSYVALKNF 323
           LP W N I      F A +F     I     L   +YGG + +    + F   +L NF
Sbjct: 94  LPSWTNNIFPKGELFDATVFTYN--ITNSTPLLKKLYGGNSTIIFLLIRFKSFSLLNF 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,749
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)