Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0106
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.5  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   9.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 83  PPLSTPSNSNATKSSGLTSP 102


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 680 PPMSMFSTASATVTSGLRYP 621
           PP+S  S ++AT +SGL  P
Sbjct: 127 PPLSTPSNSNATKSSGLTSP 146


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 480 PSISGALVMSDTS*TVRPAFRSARGGTATGNQLQATF 370
           PS++ A  + D+   ++P    + G T++     AT+
Sbjct: 174 PSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASATY 210


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 219 YNNRLSPPVNPSQVSYTVVLEQTEH 293
           Y+N    P     VSY+ V++   H
Sbjct: 52  YHNNPRDPNRARSVSYSTVIQSVPH 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,968
Number of Sequences: 336
Number of extensions: 3023
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)