Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0106
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    98   9e-22
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.5  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   3.4  
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    26   4.4  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    26   4.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   7.8  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 56/123 (45%), Positives = 74/123 (60%)
 Frame = +1

Query: 313 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRSGE 492
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA    E     +       +        +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 493 NFTSSVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFRPDGYLRPDVTVADAVENID 672
               +VH GILAR   SD++D+  Q  E I +VVCNLYPFR +   +P+VT+ +AVE ID
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFR-ETIAKPNVTIPEAVEEID 121

Query: 673 IGG 681
           IGG
Sbjct: 122 IGG 124



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +2

Query: 410 RALRNAGLTVQDVSDITRAPEMLGGRVKTLHPA 508
           + +R +G+ V DVS IT APE+LGGRVKTLHPA
Sbjct: 35  KMIRESGMEVADVSSITNAPEILGGRVKTLHPA 67


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 174 IKTQXPLDEVKNISDYNNRLSPPVNPSQV----SYTVVLEQTEH 293
           +K     +EV +IS +N+R  PP+  + V    S++V    T H
Sbjct: 427 VKPSVSPEEVHDISQFNHRNDPPITAASVDSSNSFSVHRSSTNH 470


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 460 ESTGDARRSGENFTSSVHAGILARLSDSDQEDMKR 564
           + TG A  SGENFT++    IL   +D   E  ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 522 DPSMYAGCKVFTRPPSISGALVMSDTS 442
           DP ++   K+F RPP   G L+    S
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLS 543


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 490 ENFTSSVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFRPDGYLRPDV 642
           E FTS V  GI+A +S ++    + Q+   I      +Y  R  G L  DV
Sbjct: 38  ETFTSPVFEGIMAMMSPTESWVARWQR---IDTFTPGIYATRVQGVLNEDV 85


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 463 STGDARRSGENFTSSVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFRP 618
           + G   R+G+ +T    +G+L  + DSD +D +++K  ++      L+ + P
Sbjct: 184 AAGYPSRTGQEYTDRF-SGLLQAIEDSDLKDGQKRKLHVLGGESNYLFAYDP 234


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 270 VVLEQTEHGVKWKTSSSQRFRQDGS 344
           V ++  +HG++W T   Q F +  S
Sbjct: 641 VAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 25  ISIFCLLSCEAIHCLIPIQQKKKNSSSF 108
           +S+ C  SC+      P+Q ++KNSSSF
Sbjct: 210 VSLNCSSSCKTT----PLQSREKNSSSF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,902
Number of Sequences: 5004
Number of extensions: 50916
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)