Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0106
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 59 4e-09
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 33 0.28
11_06_0257 + 21746643-21748091 32 0.49
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 31 1.1
03_01_0112 + 902459-902770,903275-903280 30 1.5
05_07_0183 + 28251548-28252009,28252172-28252594 30 2.0
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 30 2.0
11_02_0149 - 8801675-8804332 29 3.5
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 3.5
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 29 4.6
02_05_0217 - 26842625-26842790,26842985-26843136,26843264-268433... 28 8.0
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 58.8 bits (136), Expect = 4e-09
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Frame = +1
Query: 307 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRC--VGHHESTGDAR 480
K AL+S+SDKT L L L G +I++GGTA+ + ++ + + D R
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 481 RSGENFTSSVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFRPDGYLRPDVTVADA 657
+ SVH GILAR + + VVV NLYPF + ++ D
Sbjct: 106 --VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFY-NKVTSGVISFEDG 162
Query: 658 VENIDIGG 681
+ENIDIGG
Sbjct: 163 IENIDIGG 170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 413 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPA 508
+L AG+ V V IT PEML GRVKTLHP+
Sbjct: 81 SLEAAGVNVTKVEQITNFPEMLDGRVKTLHPS 112
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 337 TGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDAR-RSGE--NFTSS 507
T L A + S C + + TA S RR H VG + GD + R+ + T
Sbjct: 147 TSTLQTASATSPCSGRTTGAAATAVPFSRRRRHGGGGVGRGPADGDGQCRTHRPWDATRP 206
Query: 508 VHAGILARLSDSDQED 555
V G++ L+D + +D
Sbjct: 207 VGLGLVGALNDDEDDD 222
>11_06_0257 + 21746643-21748091
Length = 482
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 475 HLRCSRDVRHILNCEAGVPKRPWRYRHWQST 383
HL C++ R+++N +G WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 496 SFHPTSEHLRCSR-DVRHILNCEAGVPKRPWRYRHWQST 383
S HP S H S+ D I +C A V WR RH +T
Sbjct: 791 SHHPFSAHAHYSQPDFPTIASCRAAVASSKWRRRHPSTT 829
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 484 TSEHLRCSRDVRHILNCEAGVPKRPWRYR 398
T+ LR RD RH+ CE+GVPK R++
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPKEEARFK 85
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 397 GGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSVHAGILARLSDSDQ 549
GG +G +RR ++ CV E G +GE + H G+ R + ++
Sbjct: 92 GGLISGLRDRRSNALTCVSMQEGDGQGEEAGEGDVGAGH-GVAGRRPELEE 141
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 291 HGVKWKTSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQFKMCRTSREHR 470
HG ++KT+++ G ++ PA C+W RH RF A + +C ++ H
Sbjct: 344 HGDEYKTAAALTSTGAGMRAAARRCSYSCPAEGCRWNRRHPRF--QALKSVVC--AKNHY 399
Query: 471 RCSEVG*KLYIQRTC 515
R S K+Y+ C
Sbjct: 400 RRSHCP-KMYVCGRC 413
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 280 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 387
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 339 GSTLVSKEPVGMWPAVDCQWRYR----HGRFGTPASQFKMCR 452
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCP-PYRVSADASRFGDRASASRMAR 169
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 307 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHH 459
KL D LLS + LS C L+ +A + TG E SS+ H
Sbjct: 773 KLVKFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLESSLSSSQAAPEH 823
>02_05_0217 -
26842625-26842790,26842985-26843136,26843264-26843307,
26843828-26843930,26844007-26844186
Length = 214
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 13 FVFFISIFCLLSCEAIHCLIPIQQKKKNSSS 105
F+ F+ C++SCEA H + I K + S
Sbjct: 25 FIVFLFTLCIISCEARHDHLRISDKYSSKKS 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,124
Number of Sequences: 37544
Number of extensions: 343451
Number of successful extensions: 1142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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