Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0106
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 4e-22
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 60 2e-09
SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 29 3.5
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_42677| Best HMM Match : TUDOR (HMM E-Value=0) 28 6.2
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 28 8.1
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 8.1
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 101 bits (243), Expect = 4e-22
Identities = 69/154 (44%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Frame = +1
Query: 232 YRPQSTQVKSVTQ*CLSKQNMASN-GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTA 408
+ P QV T L K+ A G LALLSVS+K GL+ AK L + G +L+ASGGTA
Sbjct: 8 FAPIRMQVSKNTAHVLKKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTA 67
Query: 409 TGASERRPHSSRCVGHHESTGDARRSG---ENFTSSVHAGILARLSDSDQEDMKRQKYEM 579
A R V E TG G + +VH GILAR+S+ D+ DM +Q +E
Sbjct: 68 N-AIRNAGIPVRDVS--EITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEY 124
Query: 580 ISVVVCNLYPFRPDGYLRPDVTVADAVENIDIGG 681
I VVVCNLYPF + + V V++AVE IDIGG
Sbjct: 125 IRVVVCNLYPF-VNTVAKEGVIVSEAVEQIDIGG 157
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2
Query: 413 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPA 508
A+RNAG+ V+DVS+IT APEMLGGRVKTLHPA
Sbjct: 69 AIRNAGIPVRDVSEITGAPEMLGGRVKTLHPA 100
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +1
Query: 520 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFRPDGYLRPDVTVADAVENIDIGG 681
ILAR+S+ D+ DM +Q +E I VVVCNLYPF + + V V++AVE IDIGG
Sbjct: 2 ILARVSEGDKADMAKQGFEYIRVVVCNLYPF-VNTVAKEGVIVSEAVEQIDIGG 54
>SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 782
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 261 SYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVG 371
+YT+ LE T G KWK S+ + + + KE +G
Sbjct: 415 AYTIALESTSVGAKWKLKSTPQDSERFVQMAMKELLG 451
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 397 GGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSVHA 516
GG+ G+ + RC G +S + R +G N TS HA
Sbjct: 516 GGSIPGSGTIWMDNVRCNGTEKSLSECRHNGWNVTSCTHA 555
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +1
Query: 196 MRSRISLTTITAYRPQSTQVKSVTQ*CLSKQNMASNGKLALLSVSDKTGLLSLAKSLSEC 375
M S +L+ + S+ + S +K + AS S S + +S + SLS
Sbjct: 1 MSSSSTLSASASSNIASSDIASSANASSAKTSSASASSNIASSASASSASMSSSSSLSAS 60
Query: 376 GLQLIASGGTAT--GASERRPHSSRCVGHHESTGDARRSGENFTSSVHAGILARLSDSD 546
IAS A+ AS + S+ + S+ A + + SS+ A + ++ SD
Sbjct: 61 ASSNIASSDIASSANASSAKTSSASASSNIASSASASSASMSSASSLSASASSNIASSD 119
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/116 (23%), Positives = 45/116 (38%)
Frame = +1
Query: 196 MRSRISLTTITAYRPQSTQVKSVTQ*CLSKQNMASNGKLALLSVSDKTGLLSLAKSLSEC 375
M S SL+ + S+ + S +K + AS S S + +S A SLS
Sbjct: 51 MSSSSSLSASASSNIASSDIASSANASSAKTSSASASSNIASSASASSASMSSASSLSAS 110
Query: 376 GLQLIASGGTATGASERRPHSSRCVGHHESTGDARRSGENFTSSVHAGILARLSDS 543
IAS A+ A+ +S A S + +S++ + A L+ +
Sbjct: 111 ASSNIASSDIASSANASSAKTSSASASSNIASSASASSDVASSAIASSASASLTSA 166
>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 1150
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 201 VKNISDYNNRLSPPVNPSQVSYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVGM-W 377
V N+ N+ + P P Q S + VL + W+ + R DGS+ P G+
Sbjct: 667 VANLIHDNSTMLPADRPLQPSGSSVLMASYEQKTWEVDGTMRQAPDGSSFSEIPPQGLEM 726
Query: 378 PAVDCQWRYRHGRFGTPA 431
P V R TP+
Sbjct: 727 PQVQMCLRVMIAEVTTPS 744
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 190 PWMRSRISLTTITAYRPQSTQVKSVTQ*CLSKQNM 294
PW ++ L TI AY+ + ++K V + C + N+
Sbjct: 682 PWPSAQQELATINAYKTPTDKLKCVQRCCFTIMNL 716
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 300 KWKTSSSQRFRQDGSTLVSKEP 365
+W T ++R+R+DGS ++ EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,128
Number of Sequences: 59808
Number of extensions: 390414
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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