Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0106
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z75710-8|CAO82023.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    28   7.2  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    28   7.2  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 58/132 (43%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
 Frame = +1

Query: 292 MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERR--PHSSRCVGHHES 465
           M     LA++SVSDKTGL+ LA  L   GL LIASGGTA    ++    H    V     
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 466 TGDARRSGENFTSSVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFRPDGYLRPDVT 645
               R   +    +VH GILAR ++SD++D+++     +SVVVCNLYPF+     + D +
Sbjct: 61  MLGGRV--KTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSK-DCS 117

Query: 646 VADAVENIDIGG 681
           V +AVENIDIGG
Sbjct: 118 VEEAVENIDIGG 129



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/33 (66%), Positives = 29/33 (87%)
 Frame = +2

Query: 410 RALRNAGLTVQDVSDITRAPEMLGGRVKTLHPA 508
           +A+R+ G+ V DV+D+T+ PEMLGGRVKTLHPA
Sbjct: 40  KAIRDQGIDVHDVADVTKFPEMLGGRVKTLHPA 72


>Z75710-8|CAO82023.1|  394|Caenorhabditis elegans Hypothetical
           protein D1081.10 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 237 PPVNPSQVSYTVVLEQTEHGVKWKTSS-SQRFRQDGS 344
           PP N   +S T VL  +   +KWK S  ++R + D S
Sbjct: 129 PPTNAVFISQTHVLTSSSWFIKWKKSKHTERSKSDSS 165


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 13  FVFFISIFCLLSCEAIHCLIPIQQKKKNSS 102
           FV +++++CL+SCE I   + I+    N S
Sbjct: 506 FVLYLALYCLVSCEIIPDTVSIRGFSFNKS 535


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 13  FVFFISIFCLLSCEAIHCLIPIQQKKKNSS 102
           FV +++++CL+SCE I   + I+    N S
Sbjct: 420 FVLYLALYCLVSCEIIPDTVSIRGFSFNKS 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,132
Number of Sequences: 27780
Number of extensions: 292432
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)