Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0106
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.17 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 389 LPVAVPPRALRNAGLTVQDVSDIT---RAPEMLGGRVKTLH 502
           +P   PP A +N  +   D S +     AP MLGGR  T +
Sbjct: 312 MPCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTY 352


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 583 SVVVCNLYPFRPDGYLRPDVTVADAVENIDI 675
           S+V    +PFRP G +  D+       N DI
Sbjct: 277 SLVASRTWPFRPSGTVLKDINRQVDELNFDI 307


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 454 HHESTGDARRSGENFTSSVHAGIL 525
           HH  T   R SG   T  + AG+L
Sbjct: 539 HHRDTPVVRASGRELTIILLAGVL 562


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 454 HHESTGDARRSGENFTSSVHAGIL 525
           HH  T   R SG   T  + AG+L
Sbjct: 629 HHRDTPVVRASGRELTIILLAGVL 652


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 377 PHSDRLFANESRPVLSETLRRASFPFDAMFCLLK 276
           P+ D L+   +    S T+    FPFD   C++K
Sbjct: 135 PNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,623
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)